PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g60960.1
Common NameLOC4327581, Os01g0825000, OSNPB_010825000, P0031D02.41, P0439E11.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 252aa    MW: 26493 Da    PI: 6.9406
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g60960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-40591581100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ae
  LOC_Os01g60960.1  59 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAE 151
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++++e
  LOC_Os01g60960.1 152 LEAVRAE 158
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.17158159IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4059156IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSTERERLDE IGKKIKREPD TAGVVVAAVA GTGTGTATPI EHRVPHRLGL GGAVNTVTPC  60
AACKLLRRRC AQECPFAPYF SPHEPHKFAA VHKVFGASNV SKMLLEVGEA ERADAASSLV  120
YEANLRLRDP VYGCMGAISM LQQQVNALEA ELEAVRAEIF KRRYRQAGAA TGLMDDVQVH  180
ITAGFAAPPP PPSMHARDVV SVADAGGQGQ ELAGAPVISS ASPPVYPAGQ PSTSTTDYSS  240
LNTSEHAAYF G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-405916111113LOB family transfactor Ramosa2.1
5ly0_B2e-405916111113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.425310.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379915420.0
Expression AtlasQ5QMB4-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g60960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g60960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219190.0AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636038.10.0LOB domain-containing protein 15
SwissprotQ9AT617e-70LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A0D3EVQ20.0A0A0D3EVQ2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YGR20.0A0A0D9YGR2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FV620.0A0A0E0FV62_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4D00.0A0A0E0N4D0_ORYRU; Uncharacterized protein
TrEMBLB8ABL70.0B8ABL7_ORYSI; Uncharacterized protein
TrEMBLQ5QMB40.0Q5QMB4_ORYSJ; Os01g0825000 protein
STRINGOGLUM01G39690.10.0(Oryza glumipatula)
STRINGORUFI01G39050.10.0(Oryza rufipogon)
STRINGOS01T0825000-010.0(Oryza sativa)
STRINGONIVA01G40640.10.0(Oryza nivara)
STRINGOBART01G35680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-65LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]