PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g60640.1
Common NameLOC4327611, Os01g0821600, OSNPB_010821600, P0485B12.13, P0703B11.22, WRKY21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 281aa    MW: 29553 Da    PI: 5.4391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g60640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.32.4e-21113174258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S..SST.TEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa..edp.kvveitYegeHnh 58 
                        Dg+ WrKYGqKe++g ++pr YYrC+++  gC ++++v++s+  +dp  +++i Y geH++
  LOC_Os01g60640.1 113 TDGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATRRVQQSQsqDDPaAAFVIAYYGEHTC 174
                       6***************************9999********87621455257899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-22105174IPR003657WRKY domain
PROSITE profilePS5081116.903107172IPR003657WRKY domain
SuperFamilySSF1182902.88E-20108175IPR003657WRKY domain
SMARTSM007743.6E-29112176IPR003657WRKY domain
PfamPF031061.6E-22114174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAMLGSSSAV VLELMTMGYQ SAAYLGELLR AASPAQAGDE QQELAAEILR CCDRVIAKLN  60
RGGATGATTG KKRKAAESAA AAAVTSPSLP VTPTKRRARG AEAVREVRSG TTTDGFIWRK  120
YGQKEINGCK HPRLYYRCAF RGQGCLATRR VQQSQSQDDP AAAFVIAYYG EHTCGGDAAA  180
AAACRDGELM PPAVINSGAS SFAAAWNMAS REPASSLAVE RRSCDGDAPS ETSQGWSPSF  240
SSEVELDVVG FDLAGADSSA SPVWEFLNGS FDWEFVINSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141141741068OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.305680.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329938660.0
Expression AtlasQ8RV01-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g60640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g60640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086570.0AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence.
GenBankAY8706060.0AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621234.10.0probable WRKY transcription factor 30
TrEMBLA0A0E0N4840.0A0A0E0N484_ORYRU; Uncharacterized protein
TrEMBLQ8RV010.0Q8RV01_ORYSJ; Os01g0821600 protein
STRINGORUFI01G38690.10.0(Oryza rufipogon)
STRINGOS01T0821600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Representative plantOGRP1292445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-16WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]