PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g60600.1
Common NameOs01g0821300, P0485B12.8, P0703B11.17
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 359aa    MW: 37866.6 Da    PI: 5.242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g60600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.3e-22136197258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnh 58 
                       dDgy+WrKYGqK++++++fprsYYrC+++   +Cp++k+v++ + d  p + +++Y+ eH++
  LOC_Os01g60600.1 136 DDGYQWRKYGQKKINNTNFPRSYYRCSYHrerRCPAQKHVQQRDGDdvPALHVVVYTHEHTC 197
                       8***************************99999*******99887645678899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-24121197IPR003657WRKY domain
SuperFamilySSF1182902.48E-21130197IPR003657WRKY domain
SMARTSM007742.7E-31135199IPR003657WRKY domain
PfamPF031063.9E-23136197IPR003657WRKY domain
PROSITE profilePS5081118.326136198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MQAQSRLAAA ASGGSGSGIS GSGGISRLGG GAGEEHEAVV RELTRGHELT ARLRAEALRA  60
LRGQGQAEAT ATFILGEVSR AFTVCLSIMA SASPSASPPQ PDETPPADSA VSPPPPRAAR  120
EDNVPRKRLL TASPYDDGYQ WRKYGQKKIN NTNFPRSYYR CSYHRERRCP AQKHVQQRDG  180
DDVPALHVVV YTHEHTCLQG APAELPDAAT NGGAAAAASP DYFPAGGETP SSLRRLRGVG  240
GGGLQPQFVD HRAAMEERER QVLVSSLARV LQGRQCYDDD DDDDTDVASL GAVHARAPAA  300
AAPVAASSSS SGPVDAAGEE LDVMDYDMTD ALFWGPFGTD SNSYDGNLTS TRCFDLIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-15136197968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.579430.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8RUJ6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g60600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g60600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.10.0probable WRKY transcription factor 4
TrEMBLQ8RUJ60.0Q8RUJ6_ORYSJ; Os01g0821300 protein
STRINGORUFI01G38680.10.0(Oryza rufipogon)
STRINGORGLA01G0292000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Representative plantOGRP1438644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-18WRKY family protein