PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g60540.1
Common NameOsJ_03894, P0485B12.3, P0703B11.12, WRKY20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 376aa    MW: 40398.2 Da    PI: 6.0711
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g60540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.89.3e-23123184259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK++++s++ r Y++Ct++   +C +kk+v+ r+a +p ++ +tY +eH+++
  LOC_Os01g60540.1 123 KDGYQWRKYGQKNIQDSNYLRLYFKCTFSrerSCAAKKQVQqRDAGEPPMFLVTYLNEHTCQ 184
                       7**************************998999*******7356789*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-24111187IPR003657WRKY domain
SuperFamilySSF1182901.96E-22117186IPR003657WRKY domain
SMARTSM007748.6E-34122185IPR003657WRKY domain
PfamPF031064.7E-23123184IPR003657WRKY domain
PROSITE profilePS5081117.006124186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAFGQDTIEQ LYRELAGGRR LSAKLQALLE GPLDSRGQKE AVDVSRELGR VFMVSLYMLK  60
PCSNSSRRPE GVTRTAPETR TDDSICLHTP ARVKRVRSEE VLVRNGREEV VTRTEIITPS  120
PYKDGYQWRK YGQKNIQDSN YLRLYFKCTF SRERSCAAKK QVQQRDAGEP PMFLVTYLNE  180
HTCQQPQAVP GTPNTAGSSP TTTSRQRQSS SSPPAEMLDL TMNGAGLFSR LLLPHAVGGG  240
GSAAEEEAAI VTCLAAVISG GGAAAAPPPL IWPTSAPEAA FVASAAGHSP SAADESVADE  300
AAAAQMADMD YCFGQYDQST FGAAAAADHR VLIGDDGDVQ RIVAARIADT VWPRYTRDTS  360
AWETAGTSSM RGSID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-141241841069OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8RUA9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g60540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g60540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877896.11e-169uncharacterized protein LOC112937432
TrEMBLA0A0E0FV240.0A0A0E0FV24_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4820.0A0A0E0N482_ORYRU; Uncharacterized protein
TrEMBLQ8RUA90.0Q8RUA9_ORYSJ; WRKY transcription factor 20
STRINGORUFI01G38670.10.0(Oryza rufipogon)
STRINGONIVA01G40370.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Representative plantOGRP1688833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.17e-19WRKY DNA-binding protein 62
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]