PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g60520.1
Common NameLOC107276287, Os01g0820700, OSNPB_010820700, P0703B11.9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 284aa    MW: 31036.9 Da    PI: 6.2817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g60520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.59.7e-2271131359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp +  +tY+ eH+++
  LOC_Os01g60520.1  71 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQENdDDPPLYRVTYTYEHTCN 131
                       9**************************99999*******987516899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-2261131IPR003657WRKY domain
SuperFamilySSF1182909.15E-2264132IPR003657WRKY domain
SMARTSM007741.3E-3369132IPR003657WRKY domain
PfamPF031066.6E-2471130IPR003657WRKY domain
PROSITE profilePS5081115.81271133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MASPRLKREQ SFDFEEASAQ EAVGSASASY SPPGGGGVFG ISPPESSPRD GRKRRKDRPS  60
LVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR LYYRCSYRED RQCLASKLVQ QENDDDPPLY  120
RVTYTYEHTC NTTPVPTPDV VAEQPPPGAA GDAYLLRFGS SAGGGGGGAH QQQTERERQQ  180
QNTARRRPFM MLSFDSSSSH QLHEQPHAFP PDGQLPATAA AASPSSFTAA EALAAPPLTT  240
TMNDGGDLFS TWDALRYGLD YDHGHLGNHV YLPDDCNGGD DNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15711301068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RKRRKD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5QMC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g60520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g60520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644112.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0N4810.0A0A0E0N481_ORYRU; Uncharacterized protein
TrEMBLI1NSS80.0I1NSS8_ORYGL; Uncharacterized protein
TrEMBLQ5QMC10.0Q5QMC1_ORYSJ; Os01g0820700 protein
STRINGORUFI01G38660.10.0(Oryza rufipogon)
STRINGOS01T0820700-000.0(Oryza sativa)
STRINGORGLA01G0291800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-18WRKY DNA-binding protein 38