PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g60490.1
Common NameLOC107276640, P0703B11.5, WRKY22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 266aa    MW: 29807.4 Da    PI: 7.108
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g60490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781.1e-2452112258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                       +Dgy+WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  LOC_Os01g60490.1  52 HDGYQWRKYGQKMIRGNSFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 112
                       7***************************98999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-2542113IPR003657WRKY domain
SuperFamilySSF1182904.71E-2345114IPR003657WRKY domain
SMARTSM007741.9E-3651114IPR003657WRKY domain
PfamPF031067.0E-2553112IPR003657WRKY domain
PROSITE profilePS5081120.31253115IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVKRSDNMDS SSECSRGAHK RLLQDSRSYD QENAMKKVCI GTRTEYTYAP YHDGYQWRKY  60
GQKMIRGNSF PRCYYRCTYH QDHGCPASKH VEQHNSEDPP LFRVIYTNEH TCGTSNSASD  120
YMASSMQIQQ IADASLRKAQ AAERLRKAEV ETPRLMHSPP PRCSGGYNMA MKEEKDVIVS  180
SLLTVIRGCH IAESAGNNSA AALPVNRPPP AVARSDHYSC SYAISPELLP ASDDLTLDFM  240
LDSVLDPHWV EPLDLAWLKE STHTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-12531121068OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8SA13
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g60490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g60490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.10.0probable WRKY transcription factor 64
TrEMBLA0A0E0N4780.0A0A0E0N478_ORYRU; Uncharacterized protein
TrEMBLQ8SA130.0Q8SA13_ORYSJ; WRKY transcription factor 22
STRINGORUFI01G38630.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Representative plantOGRP1534434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-20WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]