PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g60020.1 | ||||||||
Common Name | B1148D12.1, LOC4327485, NAC4, NAC68, Os01g0816100, OSJNBa0085D07.44 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35347 Da PI: 8.4406 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.8e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v LOC_Os01g60020.1 21 LPPGFRFHPTDEELVVHYLCRKVARQPLPV-PIIAEVDLYKLDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVA 112 79****************************.88***************8877899************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++vg+kk Lvfy+g+ap+g+ktdW+mheyrl LOC_Os01g60020.1 113 PKgSARTVGIKKALVFYSGKAPRGVKTDWIMHEYRL 148 9866778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-64 | 17 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.943 | 21 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-28 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEMAAAVGGS GRRDAEAELN LPPGFRFHPT DEELVVHYLC RKVARQPLPV PIIAEVDLYK 60 LDPWDLPEKA LFGRKEWYFF TPRDRKYPNG SRPNRAAGRG YWKATGADKP VAPKGSARTV 120 GIKKALVFYS GKAPRGVKTD WIMHEYRLAD ADRAPGGKKG SQKLDEWVLC RLYNKKNNWE 180 KVKLEQQDVA SVAAAAPRNH HHQNGEVMDA AAADTMSDSF QTHDSDIDNA SAGLRHGGCG 240 GGGFGDVAPP RNGFVTVKED NDWFTGLNFD ELQPPYMMNL QHMQMQMVNP AAPGHDGGYL 300 QSISSPQMKM WQTILPPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-95 | 7 | 181 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4384 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 62530908 | 0.0 | ||||
Expression Atlas | Q52QH4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g60020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g60020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028183 | 0.0 | AB028183.1 Oryza sativa mRNA for OsNAC4 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623706.1 | 0.0 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 0.0 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | I1NSP4 | 0.0 | I1NSP4_ORYGL; Uncharacterized protein | ||||
STRING | OS01T0816100-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0288400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-86 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g60020.1 |
Entrez Gene | 4327485 |