PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g59780.1
Common NameOSJNBa0085D07.9, P0425G02.40
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 275aa    MW: 29716.1 Da    PI: 4.8336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g59780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-162576155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GV  ++ +grW+A+I   +   g +k+ +lg+f+t eeAa a++ a+ +l+g
  LOC_Os01g59780.1 25 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 76
                      89****************99966...2.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-182586IPR016177DNA-binding domain
PfamPF008471.1E-112576IPR001471AP2/ERF domain
CDDcd000181.48E-252586No hitNo description
PROSITE profilePS5103218.5842684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-202685IPR001471AP2/ERF domain
SMARTSM003801.9E-272690IPR001471AP2/ERF domain
PRINTSPR003672.6E-52738IPR001471AP2/ERF domain
PRINTSPR003672.6E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQRMTREEYL ATLRRKSSGF SRGVSKYRGV AKHHHNGRWE ARIGRAVGKK YLYLGTFDTQ  60
EEAATAYDLA AIQLRGRSAV TNFDASCYTY TDHLPPPPPP QPPSVCKTEP ELEPPQPAAP  120
PGSESLLRPK MEPCDDWEPP AICPSLRDAD DADHAIAEIL PALCMDRADF EARYPARRAR  180
DAAADGWSTS SDDVAAASVD DDVLRSLPDD VGFVDDVESL FLDAPGPAAA AAAAAMPDDV  240
ERAVQRAPSA ASRRANAAAV SYAISSLASG RWWY*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5VQQ7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g59780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g59780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0035700.0AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBankAP0043310.0AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.20.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLQ5VQQ70.0Q5VQQ7_ORYSJ; Putative AP2/EREBP transcription factor WRINKLED1
TrEMBLQ7F2H50.0Q7F2H5_ORYSJ; p0432B10.13 protein
STRINGOGLUM01G38820.11e-153(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.23e-39ERF family protein