PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g59350.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 473aa    MW: 51326.5 Da    PI: 7.3947
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g59350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.96e-10187221539
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                       k  rr+++NReAAr+sR+RKka+i++Le    +L+
  LOC_Os01g59350.1 187 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLT 221
                       788*************************8655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-7183246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117185229IPR004827Basic-leucine zipper domain
PfamPF001702.7E-7187222IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.2E-7187230No hitNo description
CDDcd147089.15E-22187239No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-7188231No hitNo description
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
PfamPF141443.9E-32269344IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEGGRLGGAA ASASAAAAAD ARGGMSGFAA PQHAIHTNLN NVQPTQVTDF GALAQSAGFR  60
IEDLANLSTN GLFNLKSNAH TIINDPLQFE NYVKSISPSN ITTTATVTVV DPQTLVPQKG  120
AQLNLVTIRT GNVENWGEST IADTSPRTDT STDPDTDERN QMFEQGQLAA PTASDSSDRS  180
KDKLDHKTLR RLAQNREAAR KSRLRKKAYI QNLESSRLKL TQIEQELQRA RQQGIFISTS  240
SDQSHSASGN GALAFDMEYA RWLEEHNKHI NELRAAVNAH AGDNDLKSTV DSIMAHYNEI  300
FKLKGVAAKA DVFHVLSGMW KTPAERCFMW LGGFRSSELL KLLAGQLEPL TEQQLAGIAN  360
LQQSSQQAED ALSQGMEALQ QSLAETLASG SLGPAGSSGN VANYMGQMAM AMGKLGTLEN  420
FLRQADNLRL QTLQQMQRIL TTRQSARALL AISDYFSRLR ALSSLWLARP RE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.350490.0callus| flower| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329791820.0
Expression AtlasQ6IVC2-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g59350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g59350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6204150.0AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651146.10.0transcription factor TGAL1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0E0FUM70.0A0A0E0FUM7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N3V00.0A0A0E0N3V0_ORYRU; Uncharacterized protein
STRINGORUFI01G37800.10.0(Oryza rufipogon)
STRINGONIVA01G39320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-148bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]