PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g57650.1
Common NameB1070A12.33, LOC4327046, Os01g0785900, OSNPB_010785900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 486aa    MW: 50616.7 Da    PI: 9.6787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g57650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05244266223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ Cg+ Fs ++ L+ H  + H
  LOC_Os01g57650.1 244 SCHRCGEQFSKWEALEAHHLSkH 266
                       7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704243271IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-24268484No hitNo description
Gene3DG3DSA:3.90.228.103.2E-12292461IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA  60
AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAA AAAGGGVLAS PHEADGDGAV VSSFVGTLRP  180
GTPGPGWSHG LQYSGSCRGS MRCTPPRSPN VLLDSRDAAA AGVTAHRASC EDAVKSFGKG  240
GGLSCHRCGE QFSKWEALEA HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE  300
RVFKVHNTQR TLARFEEYRE AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAAG  360
SSSLCASDKC AVCRIIRHGF SAKKEGKAGV GVFTTSTSGR AYESIEASAG AVVGGDDPAA  420
TRKALLVCRV IAGRVHKPLE NLKEFAGQTG FDSLAGKVGP YSNIEELYLL NPRALLPCFV  480
VICKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.379210.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329810370.0
Expression AtlasQ8LQM0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g57650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g57650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLQ8LQM00.0Q8LQM0_ORYSJ; Os01g0785900 protein
STRINGOS01T0785900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-141C2H2 family protein