PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g57580.1
Common NameB1070A12.17, LOC4327040, Os01g0784900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 353aa    MW: 37349.6 Da    PI: 6.1153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g57580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-06237279754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  LOC_Os01g57580.1 237 LLAKVRKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 279
                       56688999999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.995230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12234294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-6234284No hitNo description
Gene3DG3DSA:4.10.280.101.4E-9236288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-6236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADEWWSASQ RSHGTSACSA APSPLTADRV SCGWTSPAAA AAAESTSSIT FQDPSRSSAA  60
HHQPLSDAAS SLGDPHMVDW TQAFLSGRSD ASFQAVLQDD MAASTRPFRA QPTAADEAVM  120
TNPFRDMGVG QGLLLDQASA PLHGLSFDAG EPAVAPATHS ITTSFGDYQH SASYDAAAAV  180
MQFSQTPRAP SLPAAAQMQF LSGSYQLPFG GAPPLPSQLL LQAMQPKPSC SSNANTLLAK  240
VRKEKLGDRI TALQQLVSPF GKTDTASVLH EAIEYIKFLH EQVASLSSPY LKNGNPLQHF  300
QQKGSESTKD AEQPKPDLRS RGLCLVPVAS TYTVASETVP EFWHPTFGGT FR*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975977470.0
Expression AtlasQ5ZAK6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g57580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g57580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034060.0AP003406.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1070A12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633446.10.0transcription factor bHLH123
TrEMBLA0A0D9YFX30.0A0A0D9YFX3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FU830.0A0A0E0FU83_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N3E40.0A0A0E0N3E4_ORYRU; Uncharacterized protein
TrEMBLQ5ZAK60.0Q5ZAK6_ORYSJ; BHLH transcription factor-like protein
STRINGOGLUM01G37590.10.0(Oryza glumipatula)
STRINGORUFI01G36520.10.0(Oryza rufipogon)
STRINGONIVA01G38120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-46bHLH family protein