PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g57020.1

Common Name

OsJ_03664

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 407aa MW: 44372.1 Da PI: 10.3883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g57020.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	325	345	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + +L++H++++ LOC_Os01g57020.1 325 RCSQCGKEF-KPQELHSHMQSC 345 6******.*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.2E-34	21	166	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL 60 RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS 120 SLAEEPKKLD SQEVKVACDQ KQVEEVTTTT APDSDERSPK TLPPVDEDSP GEPASRSTAP 180 LKKDLPRGLR EERKKQQREV VKVVSKAVVV PAPAPEQKVK GAASGRISSH TPPAVGSARR 240 MHLAQLLHNL LTCGAADADD TALRPVLRHG ADDDGGDWPP TPVCPGIDGC GLRVGKKVKV 300 RRGRKDKAKP KRDGGDSHKP ASLPRCSQCG KEFKPQELHS HMQSCRVFRE KMRSSTSSRV 360 SVDRGRTSAA ARPEHRRTRS KGAAAAAAAP GDTSDRPSAV LLLRDS*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL  60
RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS  120
SLAEEPKKLD SQEVKVACDQ KQVEEVTTTT APDSDERSPK TLPPVDEDSP GEPASRSTAP  180
LKKDLPRGLR EERKKQQREV VKVVSKAVVV PAPAPEQKVK GAASGRISSH TPPAVGSARR  240
MHLAQLLHNL LTCGAADADD TALRPVLRHG ADDDGGDWPP TPVCPGIDGC GLRVGKKVKV  300
RRGRKDKAKP KRDGGDSHKP ASLPRCSQCG KEFKPQELHS HMQSCRVFRE KMRSSTSSRV  360
SVDRGRTSAA ARPEHRRTRS KGAAAAAAAP GDTSDRPSAV LLLRDS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.75351	0.0	callus\| flower\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297720452	0.0
Expression Atlas	B9ETB3	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g57020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g57020

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241481	0.0	AK241481.1 Oryza sativa Japonica Group cDNA, clone: J065166E16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633111.1	0.0	protein UPSTREAM OF FLC
Refseq	XP_025877314.1	0.0	protein UPSTREAM OF FLC
TrEMBL	B9ETB3	0.0	B9ETB3_ORYSJ; Uncharacterized protein
STRING	OS01T0778100-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10794	12	13
Representative plant	OGRP8665	3	5

Link Out ? help Back to Top
Phytozome	LOC_Os01g57020.1