PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g56690.1
Common NameOs01g0773800, P0490D09.18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 274aa    MW: 29881.4 Da    PI: 5.4049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g56690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08131191454
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksL 54 
                        h +rEr RR+r+ ++++ L+ +lP+ as              +     K +i+  A +YI++L
  LOC_Os01g56690.1 131 RHIMRERLRRERLSQGYADLQAILPTgASsskvlvkslirnYMS---GGKNTIVAAAANYIREL 191
                       599***********************997777777775444222...33556777888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.8E-53847No hitNo description
SuperFamilySSF474591.44E-10123206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.547127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-7129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5131191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MENDDDVEHP FYYFVHDDAA AGVDDHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ  60
STAAMASSSS SSESLSRRYH SSASNVHRRM HRFLRSIYDD AGDDAGATAE MQPAEGEQQQ  120
AAPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASS SKVLVKSLIR NYMSGGKNTI  180
VAAAANYIRE LEGRKGWLCA QNELLERTTP KPGAGMVVKV RAESELGSTV DVFEAVLRRL  240
KAMDELQVTA IQSWFGAGGM WMDVAVESKE KED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5ZBY8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g56690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g56690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032650.0AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635057.11e-155transcription factor BHLH148-like
TrEMBLQ5ZBY80.0Q5ZBY8_ORYSJ; Os01g0773800 protein
STRINGORGLA01G0267200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432
Representative plantOGRP1534134