PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g55750.3 | ||||||||
Common Name | LOC4327032, Os01g0763200, OSNPB_010763200, P0512C01.45 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 308aa MW: 32004.6 Da PI: 7.3267 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.2 | 1.5e-30 | 55 | 165 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + ++++++ + LOC_Os01g55750.3 55 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHL------CMGHHHHLPsamplmh 141 78***************************************************************999444......3444444441111221 PP TCP 89 kaaksaakskksqksaasalnlak 112 ++ ++ ++ + aa+a +la+ LOC_Os01g55750.3 142 HHGHHHHADDDKYHVAAAAAALAA 165 222222222233333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-27 | 56 | 118 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.951 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MILGSNQAAA AAAAAAAAEE EAAELARKHT AAVATSRQWS AQTESRIVRV SRVFGGKDRH 60 SKVKTVKGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP 120 PQDHLCMGHH HHLPSAMPLM HHHGHHHHAD DDKYHVAAAA AALAAEKEAA AAGGGGGGGG 180 DDVDGGGGGG AAHIVGRFPA GGYHRFMGLN NPLGMVNSAA GAAMPFHYAG ESWNNGSVQD 240 SGAGSPQVAA AAAHHTSPFP SLLSLAPGPH HQLVFYSSEA EQFTVDNLGS QGLSLSSARA 300 FHDQTGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27829 | 0.0 | leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 169246027 | 0.0 | ||||
Expression Atlas | Q8LR43 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g55750.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g55750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003274 | 0.0 | AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626531.1 | 0.0 | transcription factor PCF6-like | ||||
Refseq | XP_015626542.1 | 0.0 | transcription factor PCF6-like | ||||
TrEMBL | A0A0E0FTI6 | 0.0 | A0A0E0FTI6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N2T9 | 0.0 | A0A0E0N2T9_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WVC6 | 0.0 | A2WVC6_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q8LR43 | 0.0 | Q8LR43_ORYSJ; Os01g0763200 protein | ||||
STRING | ORUFI01G35100.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0763200-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G36230.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-41 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g55750.3 |
Entrez Gene | 4327032 |