PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g55750.2
Common NameLOC4327032, Os01g0763200, OSNPB_010763200, P0512C01.45
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 308aa    MW: 32004.6 Da    PI: 7.3267
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g55750.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.5e-30551653112
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                       g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ +        ++++++ +       
  LOC_Os01g55750.2  55 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHL------CMGHHHHLPsamplmh 141
                       78***************************************************************999444......3444444441111221 PP

               TCP  89 kaaksaakskksqksaasalnlak 112
                       ++   ++   ++ + aa+a +la+
  LOC_Os01g55750.2 142 HHGHHHHADDDKYHVAAAAAALAA 165
                       222222222233333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-2756118IPR005333Transcription factor, TCP
PROSITE profilePS5136929.95156114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MILGSNQAAA AAAAAAAAEE EAAELARKHT AAVATSRQWS AQTESRIVRV SRVFGGKDRH  60
SKVKTVKGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP  120
PQDHLCMGHH HHLPSAMPLM HHHGHHHHAD DDKYHVAAAA AALAAEKEAA AAGGGGGGGG  180
DDVDGGGGGG AAHIVGRFPA GGYHRFMGLN NPLGMVNSAA GAAMPFHYAG ESWNNGSVQD  240
SGAGSPQVAA AAAHHTSPFP SLLSLAPGPH HQLVFYSSEA EQFTVDNLGS QGLSLSSARA  300
FHDQTGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2061115155Putative transcription factor PCF6
5zkt_B3e-2061115155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.278290.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1692460270.0
Expression AtlasQ8LR43-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g55750.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g55750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032740.0AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626531.10.0transcription factor PCF6-like
RefseqXP_015626542.10.0transcription factor PCF6-like
TrEMBLA0A0E0FTI60.0A0A0E0FTI6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N2T90.0A0A0E0N2T9_ORYRU; Uncharacterized protein
TrEMBLA2WVC60.0A2WVC6_ORYSI; Uncharacterized protein
TrEMBLQ8LR430.0Q8LR43_ORYSJ; Os01g0763200 protein
STRINGORUFI01G35100.10.0(Oryza rufipogon)
STRINGOS01T0763200-010.0(Oryza sativa)
STRINGONIVA01G36230.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-41plastid transcription factor 1