PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g55150.1 | ||||||||
Common Name | BZIP06, LOC4325139, Os01g0756200, OsJ_03500, P0503C12.45 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 266aa MW: 28400.4 Da PI: 6.7482 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.3 | 1.2e-11 | 138 | 186 | 4 | 52 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ l LOC_Os01g55150.1 138 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 186 5999**********************************88887666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-14 | 135 | 199 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.795 | 137 | 189 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.6E-10 | 139 | 184 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.9E-12 | 139 | 193 | No hit | No description |
SuperFamily | SSF57959 | 6.54E-12 | 139 | 193 | No hit | No description |
CDD | cd14703 | 3.10E-23 | 140 | 191 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 142 | 157 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MAQLPPKIPV AAPGHHQHWA SAGGAGDAAW ADEFAEFAAS RRGAHRRSLS DSVAFVEVAP 60 AGCGAGGEFD RLDDDQLMSM FPDEGGSSAP GSDNGGSDSD GGGDKHAAAQ SDDGQHAAGE 120 PTQEQAAATS PTELIRDPKR VKRILANRQS AQRSRVRKLQ YISELERSVT TLQNEVSVLS 180 PRVAFLDQQR TILTVGNSHL KQRIAALAQD KIFKDAHQEA LRKEIERLRQ VYQQQNTKLS 240 GGLAADHAHV HGGPPPVRAE KELMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55684 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993762 | 0.0 | ||||
Expression Atlas | Q5JMK6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g55150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g55150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108553 | 0.0 | AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634100.1 | 0.0 | basic leucine zipper 6 isoform X1 | ||||
Swissprot | Q5JMK6 | 0.0 | BZP06_ORYSJ; Basic leucine zipper 6 | ||||
TrEMBL | A0A0D9YF45 | 0.0 | A0A0D9YF45_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0C7W2 | 0.0 | A0A0E0C7W2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0N2L4 | 0.0 | A0A0E0N2L4_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8A9R7 | 0.0 | B8A9R7_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM01G35480.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OMERI01G27760.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | ORUFI01G34500.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0756200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 4e-56 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g55150.1 |
Entrez Gene | 4325139 |
Publications ? help Back to Top | |||
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