PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g54600.1

Common Name

LOC4324624, Os01g0750100, OSNPB_010750100, P0481E12.50-1, WRKY13

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 317aa MW: 34294.6 Da PI: 4.6012

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g54600.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.5e-30	98	156	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+ LOC_Os01g54600.1 98 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 156 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-31	95	158	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-26	96	158	IPR003657	WRKY domain
SMART	SM00774	2.9E-36	97	157	IPR003657	WRKY domain
PROSITE profile	PS50811	31.869	98	158	IPR003657	WRKY domain
Pfam	PF03106	3.2E-26	99	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020104	anatomy	leaf sheath

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAAGEEVMDR STSAEDGYCS AGTDSPRAES VDEQGAAEES SPRGGQKREL PSPSASPSSP 60 LPPAAKRSRR SVEKRVVSVP IAECGDRPKG AGEGPPPSDS WAWRKYGQKP IKGSPYPRGY 120 YRCSSSKGCP ARKQVERSRA DPTVLLVTYS FEHNHPWPQP KSSSCHASKS SPRSTAPKPE 180 PVADGQHPEP AENESSASAE LEVPEPEPEQ ESEPVVKQEE EQKEEQKAVV EPAAVTTTVA 240 PAPAVEEEDE NFDFGWIDQY HPTWHRSYAP LLPPEEWERE LQGDDALFAG LGELPECAVV 300 FGRRRELGLA ATAPCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-20	74	158	6	79	Disease resistance protein RRS1
5w3x_D	7e-20	74	158	6	79	Disease resistance protein RRS1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.2160	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116636277	0.0
Expression Atlas	Q94J08	-

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g54600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g54600

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067329	0.0	AK067329.1 Oryza sativa Japonica Group cDNA clone:J013100D22, full insert sequence.
GenBank	AY870602	0.0	AY870602.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647591.1	0.0	probable WRKY transcription factor 65
TrEMBL	Q94J08	0.0	Q94J08_ORYSJ; Os01g0750100 protein
STRING	OS01T0750100-03	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7088	36	51
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-38	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	LOC_Os01g54600.1
Entrez Gene	4324624

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]