PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g53650.1 | ||||||||
Common Name | LOC4327885, Os01g0738400, OSJNBb0021A09.32, P0638D12.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 226aa MW: 24982.2 Da PI: 6.4994 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5.2e-06 | 87 | 112 | 3 | 26 |
S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG..tCkyGdrCkFaHg 26 e+C++f+ C++G+ C+FaHg LOC_Os01g53650.1 87 GEPCPDFRVAAraACPRGSGCPFAHG 112 5899999999999************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 83 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.037 | 84 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 119 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAYETSSDHQ LAAAAEFLAA LQVHLAGAEA SSPTWGGRCA YDEDFMMYEF KVRRCPRSRA 60 HEWTSCPYAH PGEAARRRDP SHVTYTGEPC PDFRVAARAA CPRGSGCPFA HGTFETWLHP 120 SRYRTRPCRS GMLCARPVCF FAHNDKELRI VGDDAAAATP SPRSPFTTSE DSPPPSPMDM 180 KQIVLAMQQM DARKATRSVA PKTDMLQQEL EEDAPELGWV SDLLM* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32995870 | 0.0 | ||||
Expression Atlas | Q94JI5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g53650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g53650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110661 | 0.0 | AK110661.1 Oryza sativa Japonica Group cDNA clone:002-169-F02, full insert sequence. | |||
GenBank | AP002972 | 0.0 | AP002972.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0638D12. | |||
GenBank | AP003218 | 0.0 | AP003218.6 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644032.1 | 1e-166 | zinc finger CCCH domain-containing protein 10 | ||||
Swissprot | Q94JI5 | 1e-167 | C3H10_ORYSJ; Zinc finger CCCH domain-containing protein 10 | ||||
TrEMBL | A0A0E0N268 | 1e-165 | A0A0E0N268_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NW19 | 1e-165 | I1NW19_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI01G33300.1 | 1e-166 | (Oryza rufipogon) | ||||
STRING | OS01T0738400-01 | 1e-166 | (Oryza sativa) | ||||
STRING | ORGLA01G0405900.1 | 1e-166 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11209 | 19 | 26 | Representative plant | OGRP8868 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 7e-45 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g53650.1 |
Entrez Gene | 4327885 |
Publications ? help Back to Top | |||
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