PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g53260.1

Common Name

B1060H01.11, LOC4324161, Os01g0734000, OsJ_03362, OSJNBb0036G09.22, OSNPB_010734000, WRKY23

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 255aa MW: 27796.2 Da PI: 6.9031

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g53260.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.2e-32	175	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ LOC_Os01g53260.1 175 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 233 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	161	233	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-29	167	234	IPR003657	WRKY domain
PROSITE profile	PS50811	28.885	170	235	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	175	234	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	176	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MENLQLQGDD HDDEALPHFP YFAVPSPPPL AVAPAASATT SDGHQHGPLE VLEQPPCSNN 60 LHPDGLVDGP QLAATTAVPM MLPAMTSLDW QSLLQTCLQV PPPVLEQQQP AAAAQADQYS 120 GENDHGDLQA AESSGAGNKE KQVMAKGGAG RPSGTKKKAS RPRFAFQTRS DNDILDDGYR 180 WRKYGQKAVK NSKHPRSYYR CTHHTCNVKK QVQRLAKDTS IVVTTYEGVH NHPCEKLMEA 240 LTPILKQLQF LSQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	165	232	7	74	Probable WRKY transcription factor 4
2lex_A	3e-24	165	232	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32994118	0.0
Expression Atlas	Q942D2	-

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g53260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g53260

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108909	0.0	AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBank	AY341845	0.0	AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBank	AY870607	0.0	AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876574.1	0.0	probable WRKY transcription factor 24
TrEMBL	A0A0E0FSR7	0.0	A0A0E0FSR7_ORYNI; Uncharacterized protein
TrEMBL	B8A921	0.0	B8A921_ORYSI; Uncharacterized protein
TrEMBL	Q942D2	0.0	Q942D2_ORYSJ; Os01g0734000 protein
STRING	OS01T0734000-01	0.0	(Oryza sativa)
STRING	ONIVA01G34250.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	2e-57	WRKY DNA-binding protein 24

Link Out ? help Back to Top
Phytozome	LOC_Os01g53260.1
Entrez Gene	4324161

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]