PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g53220.1 | ||||||||
Common Name | B1060H01.5, HSF03, HSF11, HSFC1B, LOC4324158, Os01g0733200, OsJ_012463, OSJNBb0036G09.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 251aa MW: 27219 Da PI: 8.9496 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.6 | 8.5e-33 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F+ k++++++d++++ +++w gn+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++ weF+h+sF +g+ +ll LOC_Os01g53220.1 25 FVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQAQLL 108 9****************************************************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 +i rkk++ LOC_Os01g53220.1 109 PRIVRKKKK 117 *****9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-35 | 19 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.5E-50 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.03E-32 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.7E-17 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.7E-29 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-17 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-17 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MMGGECKVHQ LQAAGDGGPG AVAPFVAKTF HMVSDPSTNA VVRWGGAGNT FLVLDPAAFS 60 DFLLPSYFKH RNFASFVRQL NTYGFRKVDP DRWEFAHESF LRGQAQLLPR IVRKKKKGGA 120 APGCRELCEE GEEVRGTIEA VQRLREEQRG MEEELQAMDQ RLRAAESRPG QMMAFLAKLA 180 DEPGVVLRAM LAKKEELAAA GNNGSDPCKR RRIGADTGRG GVATGGDAAE MAQSRGTVPF 240 PFSVLGQVFY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-27 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 212 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.35681 | 0.0 | callus| flower| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976334 | 0.0 | ||||
Expression Atlas | Q942D6 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g53220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g53220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066316 | 0.0 | AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence. | |||
GenBank | AY344493 | 0.0 | AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633152.1 | 0.0 | heat stress transcription factor C-1b | ||||
Swissprot | Q942D6 | 0.0 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | A0A0E0N234 | 0.0 | A0A0E0N234_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G33030.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0733200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 9e-59 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g53220.1 |
Entrez Gene | 4324158 |
Publications ? help Back to Top | |||
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