PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g53040.1 | ||||||||
Common Name | LOC4324426, Os01g0730700, OSNPB_010730700, P0435H01.28, WRKY14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 33125.6 Da PI: 4.6567 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.5e-30 | 94 | 152 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+ LOC_Os01g53040.1 94 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 152 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 31.204 | 88 | 154 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.9E-31 | 90 | 152 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-26 | 91 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-36 | 93 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 95 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MDGEWSDGAA VSSPTMSGGG GREQMKGGED VAAADCPGSP VSPSPAAAQR SAAGAAASPS 60 GRSRRSAQKR VVTVPLADVT GPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS 120 SSKGCPARKQ VERSRNDPDT VIVTYSFEHN HSATVPRAQN RQAAPQKPKA QACSPPEPVV 180 EVEPEETHQY GVTAGPATGG GGGAAAIEVR DEFRWLYDVV SVPATSTSPS DIDAADEMQL 240 YDQPMFFGGA VVGTAALLPD EFGDVGGLGG EGLGEEEALF EGLGELPECA MVFRRRAGDG 300 LEMGGGVKIE QPAESTAMT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-17 | 95 | 151 | 16 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5941 | 0.0 | callus| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994979 | 0.0 | ||||
Expression Atlas | Q94EA8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g53040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g53040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109770 | 0.0 | AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence. | |||
GenBank | AY870603 | 0.0 | AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624912.1 | 0.0 | probable WRKY transcription factor 65 | ||||
TrEMBL | Q94EA8 | 0.0 | Q94EA8_ORYSJ; Os01g0730700 protein | ||||
STRING | OS01T0730700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10947 | 33 | 41 | Representative plant | OGRP14362 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 4e-37 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g53040.1 |
Entrez Gene | 4324426 |
Publications ? help Back to Top | |||
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