PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g52540.1
Common NameLOC4324719, Os01g0723700, P0022F10.18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 720aa    MW: 82660.8 Da    PI: 6.1408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g52540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-16201041494
                       T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +rl +p  f+ ++        + + ++s + tl++++g++W v+l  +k +g+++lt+GW +Fv++n L+e +f++F++d+++ f  +v
  LOC_Os01g52540.1  20 RRLEIPQGFLIHIpevdhstfDASLPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 104
                       4688999999888888777773344488899**************..********************************998888..55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-216115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-206112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2387110IPR003340B3 DNA binding domain
CDDcd100179.86E-168107No hitNo description
SMARTSM010191.6E-1210110IPR003340B3 DNA binding domain
PfamPF023621.5E-1320103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW  60
PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG  120
SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC  180
GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD  240
ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYYSS PILESRKCSL EEPKLSNQPL  300
QCDLTTEKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER  360
SEERQPSPDS MIDQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE  420
NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA  480
EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR  540
DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETIY TSLELDYKKA  600
TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER  660
LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322326KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.792540.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975975320.0
Expression AtlasQ5JNA1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g52540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g52540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0FSH80.0A0A0E0FSH8_ORYNI; Uncharacterized protein
STRINGOS01T0723700-010.0(Oryza sativa)
STRINGONIVA01G33600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Representative plantOGRP1435744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-13B3 family protein