PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g52514.1 | ||||||||
Common Name | LOC9268171, Os01g0723500, P0022F10.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 403aa MW: 44783.2 Da PI: 10.5939 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.7 | 3.3e-21 | 21 | 120 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffkvl + ++rl +p +f++++ +g ke s+ tle +sgr+W v + r++ +++++t+GW +Fv+++ L+e +fvvF++d LOC_Os01g52514.1 21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRYD 108 56666..3444.457********888******996666799*****************..********************************* PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 g+++f + +vf++ LOC_Os01g52514.1 109 GNTRF--TAMVFDR 120 99999..6666665 PP | |||||||
2 | B3 | 53.5 | 4.4e-17 | 293 | 379 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ +v s ++++p f ++h ++e ++++l+d+ g++W+v +i ++++r l++GW F++ n L+egD +vF+l+ ef +v++f LOC_Os01g52514.1 293 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIF 378 6788999999*********9995..345679***************4.444455..9**********************9986666..99999 PP - CS B3 98 r 98 r LOC_Os01g52514.1 379 R 379 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 16 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-21 | 17 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.014 | 18 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-18 | 19 | 119 | No hit | No description |
Pfam | PF02362 | 7.0E-19 | 21 | 119 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-13 | 21 | 121 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-22 | 281 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.51E-23 | 283 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-25 | 287 | 379 | No hit | No description |
SMART | SM01019 | 1.5E-12 | 289 | 381 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.944 | 289 | 381 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-16 | 291 | 379 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA 60 ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR 120 TACEREDLMG GGGGDRPRKK RGRPRTAAAS RDAARPKKDS VGKEMVTYRA SPSGGQPLQI 180 VDSSWTPEPG STAVKNEEDA DELPVCELPA SSASPPRHVP EGALDADGGA ARRGAAKTRS 240 LQDDLALASI PPSIRRYKGY VSRRRAVATA ERQRATEIAH AFRSPLPYCV IRMSTMHVYY 300 SFMMRFPTGF SRQHLPRERT DVVLRDPGGK VWSVLYIPNT RDRLSRGWCA FARGNCLEEG 360 DYCVFELVAA AEFRVHIFRV VEPAVPAVRL RRVTVTCGRG PT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.65881 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8S2E6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g52514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g52514 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003229 | 0.0 | AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614236.1 | 0.0 | B3 domain-containing protein Os01g0723500 | ||||
Swissprot | Q8S2E6 | 0.0 | Y1235_ORYSJ; B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | A0A0E0N1W0 | 0.0 | A0A0E0N1W0_ORYRU; Uncharacterized protein | ||||
STRING | OS01T0723500-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12792 | 31 | 35 | Representative plant | OGRP7653 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g52514.1 |
Entrez Gene | 9268171 |