PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g51154.3
Common NameLOC4327680, myb28, Os01g0708000, OSNPB_010708000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 290aa    MW: 31817.3 Da    PI: 9.6847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g51154.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+e l ++v ++G+g W+tI +          R+  ++k++w+++
  LOC_Os01g51154.3  5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                      79***********************************9************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.498160IPR017930Myb domain
SuperFamilySSF466898.22E-16258IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-14556IPR009057Homeodomain-like
PfamPF002491.3E-8556IPR001005SANT/Myb domain
CDDcd116609.82E-21656No hitNo description
SMARTSM005267.8E-998175IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.042112180IPR005818Linker histone H1/H5, domain H15
PfamPF005382.6E-6118172IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.0E-10118186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-11118186IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKLK VPRIKGPSSS TSPSSQTPLL VLPPNKVAEA SPSADPEKSS QDVKIPNSMV  120
IEALCEIGDP NGSDVDAICH YIEQRHEVQA NFRRLLTAKL RRLIAAKKIE KIDRSYRITE  180
SYAAKVSQAN KSPSPKKDPA KPLKASQNLG SFAGTSPALE AAAAAAMKVA DAEAKSHLAN  240
EHMTEAERIF KLAEETESLV TLATEIYERC IYMMPLVQQF TFHHSTISL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.78100.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GUA0
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g51154.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g51154
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622157.11e-178single myb histone 4 isoform X2
SwissprotQ6WLH41e-101SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0D3ET411e-176A0A0D3ET41_9ORYZ; Uncharacterized protein
TrEMBLQ8GUA01e-176Q8GUA0_ORYSJ; MYB28 protein
STRINGOS01T0708000-001e-177(Oryza sativa)
STRINGOBART01G28260.11e-177(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-45telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]