PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g51154.3 | ||||||||
Common Name | LOC4327680, myb28, Os01g0708000, OSNPB_010708000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 290aa MW: 31817.3 Da PI: 9.6847 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.2 | 3.3e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l ++v ++G+g W+tI + R+ ++k++w+++ LOC_Os01g51154.3 5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56 79***********************************9************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.498 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.82E-21 | 6 | 56 | No hit | No description |
SMART | SM00526 | 7.8E-9 | 98 | 175 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 21.042 | 112 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.6E-6 | 118 | 172 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.0E-10 | 118 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.09E-11 | 118 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA 60 SGLGSRDKLK VPRIKGPSSS TSPSSQTPLL VLPPNKVAEA SPSADPEKSS QDVKIPNSMV 120 IEALCEIGDP NGSDVDAICH YIEQRHEVQA NFRRLLTAKL RRLIAAKKIE KIDRSYRITE 180 SYAAKVSQAN KSPSPKKDPA KPLKASQNLG SFAGTSPALE AAAAAAMKVA DAEAKSHLAN 240 EHMTEAERIF KLAEETESLV TLATEIYERC IYMMPLVQQF TFHHSTISL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7810 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8GUA0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g51154.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g51154 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ495797 | 0.0 | AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622157.1 | 1e-178 | single myb histone 4 isoform X2 | ||||
Swissprot | Q6WLH4 | 1e-101 | SMH3_MAIZE; Single myb histone 3 | ||||
TrEMBL | A0A0D3ET41 | 1e-176 | A0A0D3ET41_9ORYZ; Uncharacterized protein | ||||
TrEMBL | Q8GUA0 | 1e-176 | Q8GUA0_ORYSJ; MYB28 protein | ||||
STRING | OS01T0708000-00 | 1e-177 | (Oryza sativa) | ||||
STRING | OBART01G28260.1 | 1e-177 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-45 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g51154.3 |
Entrez Gene | 4327680 |
Publications ? help Back to Top | |||
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