PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g51140.2 | ||||||||
Common Name | LOC4327679, Os01g0707500, OsJ_03197, OSNPB_010707500, P0510F09.19-1, P0692C11.41-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 394aa MW: 40296.7 Da PI: 7.0573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19 | 2.5e-06 | 290 | 330 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P + K++ a++L +A Y+k L LOC_Os01g51140.2 290 ARLRRERVSDRLRVLQKLVPGgN------KMDTASMLDEAASYLKFL 330 599*****************955......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.24E-10 | 272 | 335 | No hit | No description |
PROSITE profile | PS50888 | 14.189 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-13 | 287 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-10 | 290 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL 60 QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG 120 GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGYDAEVV SPTSTMSAAT QSLHPKRKLY 180 DDHHHPAGIA AAAAAPPLAP CPRPTTGAVA AKRRASTSAT SITFGHQPHH HHAGATTAGY 240 EPDMEAMAQV KEMIYRAAAM RPVHLGTEAA ADKPRRKNVR ISSDPQTVAA RLRRERVSDR 300 LRVLQKLVPG GNKMDTASML DEAASYLKFL KSQVQKLETL GTTTTTSKLP QQYYSGNINS 360 SNNHHGFLGF AANNNTISAG YANSNAGNAT KLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 277 | DKPRRKN |
2 | 272 | 277 | KPRRKN |
3 | 290 | 295 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25546 | 0.0 | callus| flower| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116630838 | 0.0 | ||||
Expression Atlas | Q8S0N2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g51140.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g51140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106119 | 0.0 | AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence. | |||
GenBank | AP003273 | 0.0 | AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09. | |||
GenBank | AP003381 | 0.0 | AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629328.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
Refseq | XP_015629344.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
TrEMBL | A0A0E0FRY1 | 0.0 | A0A0E0FRY1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N1G2 | 0.0 | A0A0E0N1G2_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A2H4CAL8 | 0.0 | A0A2H4CAL8_ORYSA; BHLH family transcription factor | ||||
TrEMBL | Q8S0N2 | 0.0 | Q8S0N2_ORYSJ; BHLH transcription factor-like | ||||
STRING | ORUFI01G31350.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0707500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G32170.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g51140.2 |
Entrez Gene | 4327679 |