PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g50940.1
Common NameLOC4327669, OsJ_03182
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 474aa    MW: 50668.3 Da    PI: 8.4746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g50940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13327373455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  LOC_Os01g50940.1 327 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 373
                       799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4042228IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.45E-16322377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-15326377No hitNo description
PfamPF000107.4E-11327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSWSETDAAL FAAVLGHDAA HHLATTPPHL DAPEGSPSSA ELQASLHDLV ERQGGAWTYG  60
IFWQESRGAG AASGRAARAV LGWGDGHCRD GAGHGEVGAA ERSVARKRVL LRLHALYGGG  120
DEDGADYALR LDRVTGAEMY FLASMYFSFP EGSGGPGRAL ASGRHAWADV DPHPSGSGSA  180
PGWYVRSSLA QSAGLRTVVF LPCKGGVLEL GSVVAIRETP EVLRAIQSAM RAVPAPPEDF  240
MRIFGKDLSP GRPSQPMGCD APWTPRLVVQ TTPVRPAKKE VVKAKPAEPP KSLDFSKANV  300
QEQAGGQERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PKISKMDKAS  360
LLSDAIAYIQ ELEARLRGDA PVPARADGPA VEVKAMQDEV VLRVTTPLDE HPISRVFHAM  420
RESQISVVAS DVAVSDDAVT HTLMVRSAGP ERLTAETVLA AMSRGVSVTT PSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-25321409283Transcription factor MYC2
5gnj_B1e-25321409283Transcription factor MYC2
5gnj_E1e-25321409283Transcription factor MYC2
5gnj_F1e-25321409283Transcription factor MYC2
5gnj_G1e-25321409283Transcription factor MYC2
5gnj_I1e-25321409283Transcription factor MYC2
5gnj_M1e-25321409283Transcription factor MYC2
5gnj_N1e-25321409283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308316RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.419140.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329749640.0
Expression AtlasA2ZX10-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g50940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g50940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0030230.0AP003023.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0684B02.
GenBankAP0033810.0AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.10.0transcription factor bHLH13
TrEMBLA2ZX100.0A2ZX10_ORYSJ; Uncharacterized protein
STRINGONIVA01G32020.10.0(Oryza nivara)
STRINGORGLA01G0232100.10.0(Oryza glaberrima)
STRINGOBART01G28080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.13e-85ABA-inducible BHLH-type transcription factor