PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g50720.1 | ||||||||
Common Name | LOC4324241, Os01g0702700, OsJ_03162, OSNPB_010702700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33199.9 Da PI: 6.1746 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.6e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl LOC_Os01g50720.1 17 KGLWSPEEDEKLYNHIYRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 3e-15 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ LOC_Os01g50720.1 70 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 114 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-24 | 12 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.244 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.04E-11 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.517 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-10 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGRHACSAAG VQQKLRKGLW SPEEDEKLYN HIYRYGVGCW SSVPKLAGLQ RCGKSCRLRW 60 INYLRPDLKR GSFSQQEEDA IVGLHEILGN RWSQIASHLP GRTDNEIKNF WNSCLKKKLR 120 QRGIDPSTHQ PISTAAAAAA AALDTSTQDQ KPPATADGFA LKQQQQVFDP FPVIDSFGSG 180 FDATGMPLYG HLGGKDAAGF VDYSSVLDVS ENLGYGESSS NSSNWNCGVG APEVNNALES 240 EPLHWATESK VEPFVGYGEG DAMEHKFGLP CHGQQEQGMT HFDFDVSRSM VVGDFNFEYF 300 R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 15 | 119 | 5 | 108 | B-MYB |
1h8a_C | 3e-28 | 15 | 119 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | LKKKLRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.45892 | 0.0 | flower| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988445 | 0.0 | ||||
Expression Atlas | Q0JK18 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g50720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g50720 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111782 | 0.0 | AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633604.1 | 0.0 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-105 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | Q0JK18 | 0.0 | Q0JK18_ORYSJ; Os01g0702700 protein | ||||
STRING | OS01T0702700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-76 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g50720.1 |
Entrez Gene | 4324241 |