PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g50110.1 | ||||||||
Common Name | LOC4323897, OJ1116_H09.3, Os01g0695900, OSNPB_010695900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 29793.3 Da PI: 6.1071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++ v++ G ++W+t +r+ g+ R++k+c++rw +yl LOC_Os01g50110.1 22 RGPWTPEEDEVLARFVAREGCDRWRTLPRRAGLLRCGKSCRLRWMNYL 69 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 80 | 120 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l LOC_Os01g50110.1 80 DDEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 120 58***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.096 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-27 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.63E-10 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.805 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 77 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.96E-11 | 80 | 120 | No hit | No description |
Pfam | PF00249 | 4.2E-13 | 81 | 120 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MKRKRPAALR GGEEAAAAAL KRGPWTPEED EVLARFVARE GCDRWRTLPR RAGLLRCGKS 60 CRLRWMNYLR PDIKRCPIAD DEEDLILRLH RLLGNRWSLI AGRLPGRTDN EIKNYWNSHL 120 SKKLIAQGID PRTHKPLTAA ADHSNAAAAV AATSYKKAVP AKPPRTASSP AAGIECSDDR 180 ARPADGGGDF AAMVSAADAE GFEGGFGDQF CAEDAVHGGF DMGSASAMVG DDDFSSFLDS 240 LINDEQLGDL FVVEGNDHEH GNGEIGHGDV MESKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 20 | 124 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55528 | 0.0 | flower| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7F3D6 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g50110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g50110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108259 | 0.0 | AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence. | |||
GenBank | D88620 | 0.0 | D88620.1 Oryza sativa mRNA for OSMYB4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644524.1 | 0.0 | transcription repressor MYB5 | ||||
Swissprot | Q38850 | 4e-74 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A0E0N173 | 0.0 | A0A0E0N173_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NQY1 | 0.0 | I1NQY1_ORYGL; Uncharacterized protein | ||||
TrEMBL | O23892 | 0.0 | O23892_ORYSA; OSMYB4 | ||||
TrEMBL | Q7F3D6 | 0.0 | Q7F3D6_ORYSJ; Myb-related protein 1-like | ||||
STRING | ORUFI01G30610.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0695900-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0227100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-67 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g50110.1 |
Entrez Gene | 4323897 |
Publications ? help Back to Top | |||
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