PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g48700.1
Common NameB1144G04.29, LOC4325274, Os01g0678700, OSNPB_010678700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 295aa    MW: 32859.5 Da    PI: 10.2538
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g48700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.93e-2298174371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  LOC_Os01g48700.1  98 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 174
                       689*******...99999999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.9E-941291IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.9E-3694179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-2496174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.2E-1699175IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.7E-1899174IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144584.30E-29179281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-32181290No hitNo description
SMARTSM011384.2E-24181288IPR014889Transcription factor DP, C-terminal
PfamPF087815.8E-23182282IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERYPPFR PCTSDSFAPI SREGDDIPPQ  60
KKSVSLRSGG GGNAAEREEG GANRNGKKEK TGAQRITGWG LREFSKIVSK KVEAKGRTTY  120
NEVADEIFAE LKSITQNGLE FDEKNIRRRV YDAFNVLIAI RVIAKDKKEI KWMGLTNYRY  180
EKIQKLEEVH KELITRIKNK KKLLQEIEKQ FDDLQNITLR NQASQRPAES VNGILLPFLL  240
IKTSRKARVE IEISEDSKFA RFDFNGAPFT MHDDVSILEA IRRNKGRAGL SIHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2398175989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.163810.0panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882740.0
Expression AtlasQ84VF4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g48700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g48700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631684.10.0transcription factor-like protein DPB isoform X1
TrEMBLQ84VF40.0Q84VF4_ORYSJ; DP protein
STRINGOS01T0678700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP1434844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-54Transcription factor DP
Publications ? help Back to Top
  1. Cooper B, et al.
    Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle.
    Plant Mol. Biol., 2003. 53(3): p. 273-9
    [PMID:14750518]