PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g48470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LFY | ||||||||
Protein Properties | Length: 148aa MW: 17313.2 Da PI: 10.4827 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 24 | 4.9e-08 | 41 | 87 | 172 | 216 |
FLO_LFY 172 elvaaeekkseeekkkaskkkqkrkkkkelkse..ededeeeeeded 216 e +++++kk++++kkk++kkk+k+kkkk+++++ e+edeeeee+e+ LOC_Os01g48470.1 41 EHIKKKKKKKKKKKKKKKKKKKKKKKKKKKRERerEEEDEEEEEEEE 87 22222222222222222222222222222222211222222222222 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008483 | Molecular Function | transaminase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MRPTRTPIAS LSNAPTHSSR GKPTSSLSPP YSRYSSSRAL EHIKKKKKKK KKKKKKKKKK 60 KKKKKKKKKK REREREEEDE EEEEEEEELK LNEYIWDIYE AAKGINEKLM PGIVVYLAVH 120 DECVRLRLTG VDVKHEAWEI CLTPVQV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 70 | KKKKKKKKKKKKKKR |
2 | 57 | 70 | KKKKKKKKKKKKKR |
3 | 60 | 69 | KKKKKKKKKK |
4 | 62 | 70 | KKKKKKKKR |
5 | 64 | 70 | KKKKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g48470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g48470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003374 | 1e-160 | AP003374.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1117_G01. | |||
GenBank | AP014957 | 1e-160 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q5QM29 | 5e-75 | Q5QM29_ORYSJ; Aminotransferase-like |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g48470.1 |