PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g47670.1 | ||||||||
Common Name | OsJ_02940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 40538.3 Da PI: 6.7948 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.1 | 1.4e-09 | 61 | 148 | 49 | 128 |
NAM 49 k......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 + + +++++ wyfFs + +g rk r+++ +g W++ k+vl++ +g+ g ++++ f ++ ++ + +++ W+m e +l LOC_Os01g47670.1 61 TgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWHSEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 148 145554333457889*****98775..588999976644788**9999999998868889**********5436667789*****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.734 | 21 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-9 | 50 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-16 | 52 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGAASRPRRQ CRAPRRLDGG GGGSMDVHPS ELLPRSRCTA PRRLDDDEMD VHPSEQELIE 60 TGFAPAVARS SGDEAWYFFS AVRGLKGGRK ARTVDDGAGC WHSEAGAKPV LAASSGRRLG 120 HRQSFSFITK DDDGQRVRSG WLMVELSLDV DEEEQLVLSK VYFSPRAPGA RKPTTAAAMS 180 RHKRKLSTTD IASPPRRQRR HRVVPSSPPE EPNTSPSPAA APPDQQEGGD DDPDRGSISW 240 WLRRVFGLTA TFTEEESIEL NPWLKDILRP FPPPLPPTPP PPCPSPRRKL IDMPEIREFI 300 MRGSYLGGGP APPRYECDHP AMVMTGGDDQ QQLDEQRRDD VGDDRAHYDR VDGQLQFERH 360 YLQL* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A2ZWC2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g47670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g47670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003760 | 0.0 | AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638896.1 | 0.0 | uncharacterized protein LOC107276912 | ||||
TrEMBL | A2ZWC2 | 0.0 | A2ZWC2_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA01G0211000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g47670.1 |