PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g47360.1
Common NameLOC9272543, Os01g0662800, OSNPB_010662800, P0671D01.30
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 243aa    MW: 24922.8 Da    PI: 7.0687
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g47360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20124158135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  LOC_Os01g47360.1 124 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 158
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15117159No hitNo description
SMARTSM004014.4E-21118175IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-17118158IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011414.404118154IPR000679Zinc finger, GATA-type
CDDcd002021.37E-13123155No hitNo description
PfamPF003205.5E-18124158IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFPAGAP GDHHHHHHYK QYCGAGDGEY PDVPYGGGGS  60
VDCTLSLGTP STRRAEAAVA GLPWDQSSLQ PSCNGRQEMS GAAAPRTEPS GGAGAAAASA  120
PRRCANCDTT STPLWRNGPR GPKSLCNACG IRYKKEERRA AAAAVAPTAL ASDGGVEYAY  180
GYPRQQQQWG CYGPAVAKAA SFGMFGDAAG EDGPCLPWGL GVMPSSPAFG AVREMPSLFQ  240
YY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1019600.0stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8LR32
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g47360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g47360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032840.0AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638887.11e-175GATA transcription factor 20
TrEMBLQ8LR321e-174Q8LR32_ORYSJ; GATA-type zinc finger transcription factor-like
STRINGOS01T0662800-001e-175(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-26GATA transcription factor 20