PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g46970.2
Common NameLOC4327165, Os01g0658900, OsJ_02888, OSNPB_010658900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 361aa    MW: 38553.6 Da    PI: 9.6635
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g46970.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.64.3e-21223285163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L+ e+++l++ ++kl+ e+
  LOC_Os01g46970.2 223 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLEN 285
                       689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.5E-28193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.3E-17220282No hitNo description
SMARTSM003381.7E-20223287IPR004827Basic-leucine zipper domain
PfamPF001703.9E-19224285IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599225288IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11227281No hitNo description
CDDcd147021.26E-21228276No hitNo description
PROSITE patternPS000360230245IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982Molecular Functiontranscription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGNDEAVVTQ KMGKAPSPPK DHPALSPYLD WSNMQAYYGP GILPPTFFSP GIAAGHTPPP  60
FILGPQPLVP SAFGKPYAAI YPPGGAFSHP FMPLMVSPLS MEPAKSVNSK DSCSNKKMKE  120
IDGAAVSTGS GNSEKTSGDC SLEGSSDGNN QKASGTPKKR SIDDRPKSGV ETGGALTPND  180
RPSEQAALPN LCIPVTAIKP DVSTASDFRV IATPVTEVPT KDDKESKRER RKQSNRESAR  240
RSRLRKQAET EELARKVELL TAENTSLRRE ISRLTESSKK LRLENSALME KLTETGPDEA  300
QEVPPVKTKA QQARGVENFL SMIDKTGTPR SSGHMDHAIA TPKLRQLLGS GLATDAVAAR  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245RRSRLRK
2239246RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.4130.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166341530.0
Expression AtlasQ7E0Y1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g46970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g46970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3331840.0AY333184.1 Oryza sativa (japonica cultivar-group) G-box binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650461.10.0common plant regulatory factor 1 isoform X1
RefseqXP_015650471.10.0common plant regulatory factor 1 isoform X1
TrEMBLQ7E0Y10.0Q7E0Y1_ORYSJ; G-box binding protein
STRINGOS01T0658900-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-48G-box binding factor 3
Publications ? help Back to Top
  1. Nakagawa H,Ohmiya K,Hattori T
    A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid.
    Plant J., 1996. 9(2): p. 217-27
    [PMID:8820608]