PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g46870.1
Common NameLOC4324188, OsJ_02881, P0694A04.26
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 300aa    MW: 31538.7 Da    PI: 4.2163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g46870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20101151155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ +++a+ +l+g
  LOC_Os01g46870.1 101 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRG 151
                       69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-30101161No hitNo description
PfamPF008471.4E-12101151IPR001471AP2/ERF domain
SMARTSM003807.8E-37102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29102160IPR001471AP2/ERF domain
PROSITE profilePS5103223.024102159IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22102161IPR016177DNA-binding domain
PRINTSPR003672.4E-10103114IPR001471AP2/ERF domain
PRINTSPR003672.4E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEDEGCGGRR VGSMVRELPP AQMPVAQAGF APAAAAAAAA  60
LPEQCSGGDG DMGRRVVGGG CTVGVGRRRL TKDGGPGAPS TKFRGVRRRP WGKFAAEIRD  120
PWRGVRVWLG TFDTAEEAAR VYDNAAIQLR GPSATTNFSA STNSAGAQDP VAVGYESGAE  180
SSPAVSSPTS VLRKVPSLCS LAEDKDDYEA GPCEPATAAG SNLTVLEEEE LGEFVPFEDA  240
PVYGGSSFWD FEPESGFLYA EPSSPETPWD AGATSSGEAQ DYFQDLRDLF PLNPLPAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2295163776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.384220.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO334400210.0
Expression AtlasQ5SMZ8-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g46870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g46870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032940.0AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635207.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLQ5SMZ80.0Q5SMZ8_ORYSJ; Transcription factor Pti6-like
STRINGORUFI01G28060.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-24cytokinin response factor 1