PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g44430.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ZF-HD

Protein Properties

Length: 1552aa MW: 142667 Da PI: 10.3594

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g44430.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	87.9	9.9e-28	1356	1407	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eCl+NhAa+ Ggh+vDGCgEfmp+ +t + l CaACgCHR+FHRr+++ LOC_Os01g44430.1 1356 RCRYHECLRNHAAASGGHVVDGCGEFMPA----STEEPLACAACGCHRSFHRRDPS 1407 79************************9....5668**************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.160.10.10	5.6E-5	866	1015	No hit	No description
ProDom	PD125774	2.0E-35	1340	1405	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-22	1357	1405	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.9E-24	1358	1405	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.818	1359	1405	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.2E-26	1467	1540	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-16	1470	1539	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-22	1479	1534	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1552 aa Download sequence Send to blast
MANFYSGVLI FSVLLISLWT VTPVLSHSEL DYGRRAKNEK TPNDGNDMSK EIGKGEEQHV 60 NQEAADAAVV LKTKEEIAKR TAEHIQSTIG SSRVAIHEKE ELLEKTAEVM SHMAGEVSDQ 120 LSKVAKEHTK IAVGSIATAL KFKQEVLKQA AQRVKDVSED VHMATKAKQE ILQNVAHDMG 180 KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGA RVHVSGGIHA NIHISASASA 240 HAKASAAASA GVGAKASKSV SGNVGNNAEE YAGANGNVHG KAKAGISAGF GISAGAKVAA 300 GIGANAGVGG DAQTNAKAGV GAGIGISGGA KVAGGIGAKA GVGADANANA KAGIGAGVGI 360 SGGAKVGADI GAKAGVGGNA NAKAGVGAGV GISGGAKVGA KIGAKAGVGG DVNAKAGIGA 420 GVGISGDTKL GADIGAKAGV GADANANAKA GIGAGVGISG GAKVGADIGA KAGVGGDAYT 480 KAKAGVGAGV GISGGAKVAS GIGANAGVGA DANANAKAGI GAGVGISGAA KVGADIGAKA 540 GVGGDMNAKA GIGAGVGISG GAKVGADIGA KAGVGADTNV NAKAGIGAGA GISGGAKVGA 600 DIGAKAGVGA DANAKAGIGA GIGISGGAKV GADIGAKAGV GADANANAKA GIGAGVGISG 660 GAKVGADIGA KAGVAGDTYT KEKAGVGAGV GISGGAKVGA EIGAKAGVGA DANANEKAGI 720 DAGVGISGRA KVGAGIGAKA GIGANANANA KAGIGAGVGI SGGAKVGADI GAKARVGADA 780 NANAKAGIGA GAGISGGAKV GADIGAKAGV GGGAIAKAGI GAGVGISGGA KVGADIGAKT 840 GVAGDANAKV GIGAGVGISG GAKVGADIGA KAKVGGDTNA KAGIGAGVGI SGGAKVGADI 900 GAKAEVGADA NAKAKASIGA GVGISGGAKV GADIGAKAGV GGDVYTKAKA GVGADVGISG 960 GAKVAGGIGT NARVGADANA NAKAGIGAGV GISGGAKVGA DIRAKAGVGG DVNAKAGIGA 1020 GVDISGGAKV GTDIGAKAGV GADANANAKA GIGAVAGISG GAKVGTDIGA KAGVGADANT 1080 KAGIGAGGGI SGGAKVGADI GAKAGVGADA NANAKDGIGA GAGISGGAKV GADIRAKAGG 1140 GADANANAKD GIGAGAGISR GAKVGADIGA KAGVGADANA KAGIGAGVGI SGGAKVGADI 1200 GAKARVGADA NANAKAGIGA GASISGGAKV GADIGAKAGV GADANSKAGI GAGVGISGGV 1260 KVGADIGAKA GVGADVNANA KAGIGAGVGI SGGAKVGADI GAKAGVGGDA YTKAKAGVGA 1320 GLSEHEEDAG DVGGGCSSPP TPPHRVLTSA APETIRCRYH ECLRNHAAAS GGHVVDGCGE 1380 FMPASTEEPL ACAACGCHRS FHRRDPSPGR AGAARLPQLH LPASINSRAP PALLLPPAAA 1440 ASKQGLPFPG YGTPSGGTGT TTASSSDERL RPSPVQPRRR SRTTFTREQK EQMLAFAERV 1500 GWRIQRQEEA TVEHFCAQVG VRRQALKVWM HNNKHSFKQK QQQENRQEQQ Q*

Sequence ? help Back to Top

Protein Sequence Length: 1552 aa Download sequence Send to blast

MANFYSGVLI FSVLLISLWT VTPVLSHSEL DYGRRAKNEK TPNDGNDMSK EIGKGEEQHV  60
NQEAADAAVV LKTKEEIAKR TAEHIQSTIG SSRVAIHEKE ELLEKTAEVM SHMAGEVSDQ  120
LSKVAKEHTK IAVGSIATAL KFKQEVLKQA AQRVKDVSED VHMATKAKQE ILQNVAHDMG  180
KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGA RVHVSGGIHA NIHISASASA  240
HAKASAAASA GVGAKASKSV SGNVGNNAEE YAGANGNVHG KAKAGISAGF GISAGAKVAA  300
GIGANAGVGG DAQTNAKAGV GAGIGISGGA KVAGGIGAKA GVGADANANA KAGIGAGVGI  360
SGGAKVGADI GAKAGVGGNA NAKAGVGAGV GISGGAKVGA KIGAKAGVGG DVNAKAGIGA  420
GVGISGDTKL GADIGAKAGV GADANANAKA GIGAGVGISG GAKVGADIGA KAGVGGDAYT  480
KAKAGVGAGV GISGGAKVAS GIGANAGVGA DANANAKAGI GAGVGISGAA KVGADIGAKA  540
GVGGDMNAKA GIGAGVGISG GAKVGADIGA KAGVGADTNV NAKAGIGAGA GISGGAKVGA  600
DIGAKAGVGA DANAKAGIGA GIGISGGAKV GADIGAKAGV GADANANAKA GIGAGVGISG  660
GAKVGADIGA KAGVAGDTYT KEKAGVGAGV GISGGAKVGA EIGAKAGVGA DANANEKAGI  720
DAGVGISGRA KVGAGIGAKA GIGANANANA KAGIGAGVGI SGGAKVGADI GAKARVGADA  780
NANAKAGIGA GAGISGGAKV GADIGAKAGV GGGAIAKAGI GAGVGISGGA KVGADIGAKT  840
GVAGDANAKV GIGAGVGISG GAKVGADIGA KAKVGGDTNA KAGIGAGVGI SGGAKVGADI  900
GAKAEVGADA NAKAKASIGA GVGISGGAKV GADIGAKAGV GGDVYTKAKA GVGADVGISG  960
GAKVAGGIGT NARVGADANA NAKAGIGAGV GISGGAKVGA DIRAKAGVGG DVNAKAGIGA  1020
GVDISGGAKV GTDIGAKAGV GADANANAKA GIGAVAGISG GAKVGTDIGA KAGVGADANT  1080
KAGIGAGGGI SGGAKVGADI GAKAGVGADA NANAKDGIGA GAGISGGAKV GADIRAKAGG  1140
GADANANAKD GIGAGAGISR GAKVGADIGA KAGVGADANA KAGIGAGVGI SGGAKVGADI  1200
GAKARVGADA NANAKAGIGA GASISGGAKV GADIGAKAGV GADANSKAGI GAGVGISGGV  1260
KVGADIGAKA GVGADVNANA KAGIGAGVGI SGGAKVGADI GAKAGVGGDA YTKAKAGVGA  1320
GLSEHEEDAG DVGGGCSSPP TPPHRVLTSA APETIRCRYH ECLRNHAAAS GGHVVDGCGE  1380
FMPASTEEPL ACAACGCHRS FHRRDPSPGR AGAARLPQLH LPASINSRAP PALLLPPAAA  1440
ASKQGLPFPG YGTPSGGTGT TTASSSDERL RPSPVQPRRR SRTTFTREQK EQMLAFAERV  1500
GWRIQRQEEA TVEHFCAQVG VRRQALKVWM HNNKHSFKQK QQQENRQEQQ Q*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.91416	0.0	leaf\| root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g44430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g44430

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004367	0.0	AP004367.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0696E01.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638769.1	0.0	fibroin heavy chain
TrEMBL	A0A0E0MZQ8	0.0	A0A0E0MZQ8_ORYRU; Uncharacterized protein
STRING	ORUFI01G26740.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13926	2	2
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-39	homeobox protein 22

Link Out ? help Back to Top
Phytozome	LOC_Os01g44430.1