PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g43650.2 | ||||||||
Common Name | LOC4326690, Os01g0626400, OsJ_02674, OSNPB_010626400, P0006C01.25, P0688A04.3, WRKY11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 380aa MW: 39856 Da PI: 7.0634 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.3e-32 | 205 | 262 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ LOC_Os01g43650.2 205 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 262 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-34 | 189 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-29 | 197 | 264 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 199 | 264 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 204 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 205 | 262 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MSSGGGGGGG GDRHGPYHQH GHLGRGEGAD YVYSSSDMES FFFSQPGGVG IGGGGGGVVG 60 AGGADEIMPY SSITDYLQGL LDPSGLARHL DVACPSSQDT VVKQELSVDV TSHDSQGTGG 120 VAGEGVAQAT PNSSASFSSS DGEAEGGKSS RRCKKGQAKA EEEDDKDEED GENSKKPNKP 180 KKKAEKRQRQ PRVAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKR 240 VERSYQDPST VITTYEGQHT HHSPASLRGG GGGVGIVGGH HHHHLFMPGV HGLPPSHLMP 300 AGFHPELMGL MHHHPAMAAA AANPSMYFPG VAASAPPPPA VAGGGAMPPN DHPPLQQHHF 360 TDYALLQDLF PSTMPSSNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 197 | 265 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 197 | 265 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.30512 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993954 | 0.0 | ||||
Expression Atlas | Q9FE35 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g43650.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g43650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108745 | 0.0 | AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence. | |||
GenBank | AY341856 | 0.0 | AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626307.1 | 0.0 | WRKY transcription factor 71 | ||||
TrEMBL | Q9FE35 | 0.0 | Q9FE35_ORYSJ; DNA-binding protein WRKY2-like | ||||
STRING | OS01T0626400-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 6e-42 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g43650.2 |
Entrez Gene | 4326690 |
Publications ? help Back to Top | |||
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