PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g43590.2
Common NameHSF02, HSF13, HSFC1A, LOC4326685, Os01g0625300, OsJ_002575, OsJ_02668, P0006C01.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 340aa    MW: 36862.7 Da    PI: 6.691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g43590.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87e-33271182102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll
  LOC_Os01g43590.2  27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLL 110
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                        +i r+k+
  LOC_Os01g43590.2 111 PRIVRRKK 118
                       *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3622116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3423116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-2927116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-162750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA  60
FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE SFLRGQTHLL PRIVRRKKRG  120
EGGGGGGGAS CSFGGGAGEH QVAAAAASVG MSGEEEDAAE DVLAKEAALF EEVQRLRHEQ  180
TAIGEELARM SQRLQATERR PDQLMSFLAK LADDPNAVTG HLLEQAAERK RRRQHLPSHE  240
PTVCPLPPAP PPQPPQPLLA LAGAAAMDGT YWWTTEHHHH HHHQMKPMTV LPSLEPPTAS  300
CGVHQVPELG GGGVMGLTTD GEAKVEPPFP FCLLGQAFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221711619129Heat shock factor protein 1
5d5v_B3e-221711619129Heat shock factor protein 1
5d5v_D3e-221711619129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400150.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329795030.0
Expression AtlasQ6VBA4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g43590.2
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g43590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694790.0AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636084.10.0heat stress transcription factor C-1a
SwissprotQ6VBA40.0HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A0D3ERF20.0A0A0D3ERF2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YBX80.0A0A0D9YBX8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MZG90.0A0A0E0MZG9_ORYRU; Uncharacterized protein
STRINGOGLUM01G27120.10.0(Oryza glumipatula)
STRINGORUFI01G26140.10.0(Oryza rufipogon)
STRINGOS01T0625300-010.0(Oryza sativa)
STRINGOBART01G23320.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-57heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]