PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g43590.1 | ||||||||
Common Name | HSF02, HSF13, HSFC1A, LOC4326685, Os01g0625300, OsJ_002575, OsJ_02668, P0006C01.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 349aa MW: 37755.8 Da PI: 6.691 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 92.8 | 4e-29 | 27 | 127 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F+ k+y+++ d++++ l++w +++nsfvv+d+ f++ +Lp +Fkh nf+SFvRQLn+Y + + +k +++ weF+h+sF +g+++ll LOC_Os01g43590.1 27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYVSIIQSPAPGFRKVHPDRWEFAHESFLRGQTHLL 119 9**********************************************************877766666666667999**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 +i r+k+ LOC_Os01g43590.1 120 PRIVRRKK 127 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.5E-34 | 22 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.8E-46 | 23 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.9E-32 | 23 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.5E-10 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-26 | 27 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-10 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-10 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA 60 FSQLLLPCFF KHGNFSSFVR QLNTYVSIIQ SPAPGFRKVH PDRWEFAHES FLRGQTHLLP 120 RIVRRKKRGE GGGGGGGASC SFGGGAGEHQ VAAAAASVGM SGEEEDAAED VLAKEAALFE 180 EVQRLRHEQT AIGEELARMS QRLQATERRP DQLMSFLAKL ADDPNAVTGH LLEQAAERKR 240 RRQHLPSHEP TVCPLPPAPP PQPPQPLLAL AGAAAMDGTY WWTTEHHHHH HHQMKPMTVL 300 PSLEPPTASC GVHQVPELGG GGVMGLTTDG EAKVEPPFPF CLLGQAFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-20 | 17 | 125 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-20 | 17 | 125 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-20 | 17 | 125 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 241 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.40015 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979503 | 0.0 | ||||
Expression Atlas | Q6VBA4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g43590.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g43590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344495 | 0.0 | AY344495.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636084.1 | 0.0 | heat stress transcription factor C-1a | ||||
Swissprot | Q6VBA4 | 0.0 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | I1NPU2 | 0.0 | I1NPU2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0188200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP12902 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 9e-54 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g43590.1 |
Entrez Gene | 4326685 |
Publications ? help Back to Top | |||
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