PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g43550.2 | ||||||||
Common Name | LOC4326683, Os01g0624700, OSNPB_010624700, P0006C01.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 36672.4 Da PI: 6.1805 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 6.9e-27 | 177 | 235 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p ++++tY eH h+ LOC_Os01g43550.2 177 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 235 799***********************9988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 30.377 | 171 | 237 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 172 | 237 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-24 | 174 | 237 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-32 | 176 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-22 | 178 | 235 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP 60 ARAPDGPDQM ARASASALYD LEYLDLDHKP FLLPGSSSSS SSSRAVARAR GEDDGKGRHE 120 VMISFPAAAA ASTSGAQPRS PSGRKPGIRT PRPKRSKKSQ LKKVVYEVPV ADGGVSSDLW 180 AWRKYGQKPI KGSPYPRGYY KCSSMKGCMA RKMVERSPAK PGMLVVTYMA EHCHPVPTQL 240 NALAGTTRHK SAPTGDDDKP TSPGPAAGRA AAGEGVVKCE DVDGNELSAM AADGGAEDTA 300 AAADDDGELW PEGMGLELDE FLGPMDDDVF EFDHVLEDDG VLGRRLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-21 | 158 | 238 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-21 | 158 | 238 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996625 | 0.0 | ||||
Expression Atlas | Q5ZEB2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g43550.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g43550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111416 | 0.0 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. | |||
GenBank | AY870601 | 0.0 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640600.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | Q5ZEB2 | 0.0 | Q5ZEB2_ORYSJ; DNA-binding protein WRKY3-like | ||||
STRING | OS01T0624700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-39 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g43550.2 |
Entrez Gene | 4326683 |