PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g42970.2
Common NameLOC4326652, OsJ_02611
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 462aa    MW: 50230 Da    PI: 7.2677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g42970.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-11107132227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C f++ t tCk+G++CkF H++
  LOC_Os01g42970.2 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132
                       7889********************97 PP
2zf-CCCH40.74.1e-13157182227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C+ff++tG Ck+G++CkF+H++
  LOC_Os01g42970.2 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182
                       6899********************96 PP
3zf-CCCH31.14e-10211235327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++lC+f+a+tG Ck+ + CkF+H++
  LOC_Os01g42970.2 211 EPLCSFYAKTGKCKFRAMCKFNHPK 235
                       79*********************96 PP
4zf-CCCH39.87.4e-13288313126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f++++G Ck+G++C+F+H+
  LOC_Os01g42970.2 288 PGEVDCPFYMKMGSCKFGSTCRFNHP 313
                       57899********************9 PP
5zf-CCCH36.11.1e-11371392526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+f+++tG+Ck+ drCkF+H+
  LOC_Os01g42970.2 371 VCDFYMKTGFCKFADRCKFHHP 392
                       7********************8 PP
6zf-CCCH33.85.6e-11426448527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        C f+++tG Ck+G +CkF H+p
  LOC_Os01g42970.2 426 VCAFYMKTGVCKFGMQCKFDHPP 448
                       7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0038105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5106132IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8107132IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23155183IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5161182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267208236IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5208235IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6211235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4213234IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7287314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601287315IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5291314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4293312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7365394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859366394IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7366393IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8370392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6371392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408421449IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5421448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5424449IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8425448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4426446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQEGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKVNALAS GNTNDKHLIA DSSILPVRPS EPLCSFYAKT GKCKFRAMCK FNHPKDIEIP  240
SSQNEPESAV TVEGETDIGS AADSVSAKMQ TPVAAAQEFN SKGLPMRPGE VDCPFYMKMG  300
SCKFGSTCRF NHPDRLVLNF PLPLGQTILP TPESMLLNSS ANFMQGFDFH AAHMPVGPGP  360
VTYPQRPGAT VCDFYMKTGF CKFADRCKFH HPIDRSAPDP SANWEPAEES VQLTLAGLPR  420
REDAVVCAFY MKTGVCKFGM QCKFDHPPPQ EAIAKVSNSG S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.14860.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887790.0
Expression AtlasB7F4K7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g42970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g42970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLB7F4K70.0B7F4K7_ORYSJ; cDNA clone:002-103-E06, full insert sequence
STRINGOS01T0616400-020.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-141floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]