PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g42710.1

Common Name

LOC4325320, OsJ_02587

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 1464aa MW: 151718 Da PI: 3.7049

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g42710.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.3	4e-11	1373	1397	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ LOC_Os01g42710.1 1373 CGSCRILLAYFRGAGYVHCTCCQTM 1397 ***********************96 PP
2	zf-LSD1	40.5	4.6e-13	1411	1435	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V LOC_Os01g42710.1 1411 CGHCATLLMYPFGAPAVKCSLCLFV 1435 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-10	1370	1400	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-7	1373	1396	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.6E-8	1409	1436	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.6E-10	1411	1435	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1464 aa Download sequence Send to blast
MASLPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP 60 GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP 120 SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPT 180 RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPPTPPLES 240 GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG 300 STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA 360 AVSVSPVLES REPDVAEGDV VSGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA 420 ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS 480 TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA 540 AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS PVLDSGDPDA 600 AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG 660 SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM EVMYGETGTA 720 AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC 780 KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDVEK PASITQAEPS 840 SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM 900 ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC 960 SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL 1020 PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESLQKPL 1080 PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP 1140 QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS 1200 EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK 1260 NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA 1320 MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL 1380 AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE 1440 RNVRRRLSIE QPTRTNSSGL AEA*

Sequence ? help Back to Top

Protein Sequence Length: 1464 aa Download sequence Send to blast

MASLPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP  120
SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPT  180
RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPPTPPLES  240
GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG  300
STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA  360
AVSVSPVLES REPDVAEGDV VSGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA  420
ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS  480
TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA  540
AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS PVLDSGDPDA  600
AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG  660
SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM EVMYGETGTA  720
AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC  780
KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDVEK PASITQAEPS  840
SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM  900
ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC  960
SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL  1020
PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESLQKPL  1080
PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP  1140
QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS  1200
EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK  1260
NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA  1320
MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL  1380
AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE  1440
RNVRRRLSIE QPTRTNSSGL AEA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.1021	0.0	callus\| panicle\| stem\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32975393	0.0
Expression Atlas	A2ZVC5	-

Function -- GeneRIF ? help Back to Top
OsLOL5 ZFP could regulate oxidative stress function, but could also provide a basis for salt-resistant rice strains. [PMID: 26920613]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g42710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g42710

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002866	0.0	AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
GenBank	AP003314	0.0	AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A2ZVC5	0.0	A2ZVC5_ORYSJ; Uncharacterized protein
STRING	ONIVA01G25680.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25
Representative plant	OGRP14336	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2

Link Out ? help Back to Top
Phytozome	LOC_Os01g42710.1
Entrez Gene	4325320

Publications ? help Back to Top
Guan QJ, et al. A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice. BMC Genomics, 2016. 17: p. 142 [PMID:26920613]