PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g40670.1 | ||||||||
Common Name | LOC4324449, Os01g0589300, OsJ_02415, OSNPB_010589300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 32691.1 Da PI: 8.3944 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 3e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++rWT+eE+ l+ +v+++G+g W+tI r R+ ++k++w+++ LOC_Os01g40670.1 5 KQRWTAEEEAALKAGVAKHGTGKWRTILRDPEftallRLRSNVDLKDKWRNL 56 79***********************************99***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.81 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 9.58E-19 | 6 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 6.1E-18 | 122 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.28E-17 | 123 | 201 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 25.154 | 125 | 193 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 1.7E-13 | 125 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 6.8E-11 | 130 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MGAPKQRWTA EEEAALKAGV AKHGTGKWRT ILRDPEFTAL LRLRSNVDLK DKWRNLSVTA 60 GGYGSRERAR VALKGGKRGP KALAEPMDAD EKNPDIDDNA IIDAQPLAVV VEPMQLESTP 120 EKEKSVARLD DLILEAIKKL KEPSGSNRTT ISSYIEEQYW PPEDFQRLLS TKLKALVATG 180 KLIKVNQKYR IAPSSNSSGG KSIKVYSTGE MNIENNNVRQ LSKPQVDAEL DKMKSMSKEE 240 AASFAARAVA EAEAAIAEAE EAARAAEAAE AEADAAKAFL DAVVTTMQNR NHASAMLRAC 300 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.8369 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32988249 | 0.0 | ||||
Expression Atlas | Q0JLM2 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g40670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g40670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK103040 | 0.0 | AK103040.1 Oryza sativa Japonica Group cDNA clone:J033117F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613057.1 | 0.0 | single myb histone 2 | ||||
Swissprot | B4FT40 | 1e-127 | SMH2_MAIZE; Single myb histone 2 | ||||
TrEMBL | Q0JLM2 | 0.0 | Q0JLM2_ORYSJ; Os01g0589300 protein | ||||
STRING | OS01T0589300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 | Representative plant | OGRP855 | 16 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-70 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g40670.1 |
Entrez Gene | 4324449 |
Publications ? help Back to Top | |||
---|---|---|---|
|