PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g40430.1
Common NameLOC107278717, OsJ_02392, P0700A11.5, P0712E02.31, WRKY27
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 311aa    MW: 32557.3 Da    PI: 8.6096
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g40430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.8e-29147206159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+
  LOC_Os01g40430.1 147 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 206
                       58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-30135206IPR003657WRKY domain
SuperFamilySSF1182903.66E-26140207IPR003657WRKY domain
PROSITE profilePS5081127.209142208IPR003657WRKY domain
SMARTSM007748.9E-35147207IPR003657WRKY domain
PfamPF031064.2E-25148206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNTFTLFRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPDACQCHAS KKDEADAGNG  60
GGDGYLALAL RCAPAAGEPM VHPKRQRATT NSSSSSSICG EYGGGAAAAA VPAGHDDDDR  120
SCMITAASTA NRPGRVVLRT RCSAPTVKDG CQWRKYGQKT AKGNPWPRGY YRCTGAPGCP  180
VKKQVQRCNH DTSVLVTTYD GVHNHPITPY AAALPPSSSS SSSAAVAMLA SSSSSSTWSE  240
LQRAMPAAQS SWSQRNYPIQ ADVVAKAIWD PKFQATVAAA VASYVRDREQ SARVAGGKGA  300
GELFNLAPPC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-24135209275WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ94D31
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g40430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g40430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033000.0AP003300.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0700A11.
GenBankAP0034920.0AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.10.0probable WRKY transcription factor 72
TrEMBLQ94D310.0Q94D31_ORYSJ; WRKY transcription factor 27
STRINGORUFI01G23680.11e-164(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-39WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]