PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g40260.1 | ||||||||
Common Name | LOC4327651, Os01g0584900, OsJ_02377, OSJNBb0024F06.22, OSNPB_010584900, P0712E02.9, WRKY77 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 26500.7 Da PI: 7.6528 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4.1e-31 | 136 | 194 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+ LOC_Os01g40260.1 136 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 194 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 123 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 129 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.35 | 131 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 136 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 137 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSSLYPSLLS LSESPAEYRQ VGGGRYAGED VVDDDDDMAA VADAVSSYLS FDMDDVEYYT 60 PEVGFHSKQH NPPPVAAAPL EAGGGREQSR REAAVNLGKM DRGPAPVSGG AATGGVPRSK 120 NGSKIAFKTR SEVDVLDDGY RWRKYGKKMV KNSPNPRNYY RCSSEGCRVK KRVERARDDA 180 RFVVTTYDGV HNHPAPLHLR PQLPPPGGYS IAGAPAVVAP HGRLGLEEAE VIALFRGTTA 240 TSLLLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-26 | 127 | 196 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-26 | 127 | 196 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.30657 | 0.0 | callus| leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993731 | 0.0 | ||||
Expression Atlas | Q94D50 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g40260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g40260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108522 | 0.0 | AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence. | |||
GenBank | AY341846 | 0.0 | AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635031.1 | 1e-180 | WRKY transcription factor SUSIBA2 | ||||
TrEMBL | Q94D50 | 1e-179 | Q94D50_ORYSJ; Os01g0584900 protein | ||||
STRING | OS01T0584900-01 | 1e-179 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 8e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g40260.1 |
Entrez Gene | 4327651 |
Publications ? help Back to Top | |||
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