PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39850.1
Common NameHAP5, Os01g0580400, OsJ_02344, OSNPB_010580400, P0672C09.23
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 443aa    MW: 48716.1 Da    PI: 4.9339
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.72.4e-2721122199
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       q+  fw ++   ie+++df +h++P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +d
  LOC_Os01g39850.1  21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAKAIASTESYD 113
                       68899*765566********************************************************************************* PP

             NF-YC  91 flvdivprd 99 
                       flvdi  ++
  LOC_Os01g39850.1 114 FLVDILHNH 122
                       ****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.14E-1628124IPR009072Histone-fold
PfamPF008082.0E-944106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.1E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEQTLDVPRS LRLLAPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIVSSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAKAIASTE SYDFLVDILH  120
NHRVKHKSTP CSTLTTKRCR LVDQPSTSHM PYQHQLPQFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSPMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIVGCSS  240
PTVLASMMSP ALLEVAGTSL NPPNSHSICT MNMINSSDPS GSSIGDINVA NQASLAPSGR  300
FNPAILRESS CPSFLHSNND TIVAIPEGVD ISGTMDVASD VAAIVINGQE EHERETNVEH  360
HQQNEIYESI DIGIINASVA DDNKYSISWD ELGMADDSLL DKFLEEFQVR NDGVLRTGIE  420
LHEDPFLGDV MLANPSTSNA NK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-1831119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.893080.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160114850.0
Expression AtlasQ8W099-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035460.0AP003546.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672C09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3324670.0AY332467.1 Oryza sativa (japonica cultivar-group) putative hap5 protein (HAP5) mRNA, complete cds.
GenBankGU1203480.0GU120348.1 Oryza sativa Japonica Group clone KCS260F03 transcription binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621622.10.0uncharacterized protein LOC4324193 isoform X1
TrEMBLA0A0E0MYG80.0A0A0E0MYG8_ORYRU; Uncharacterized protein
TrEMBLA0A2H4C0A00.0A0A2H4C0A0_ORYSA; Histone-like transcription factor
TrEMBLQ8W0990.0Q8W099_ORYSJ; Os01g0580400 protein
STRINGORUFI01G23220.10.0(Oryza rufipogon)
STRINGOS01T0580400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-24nuclear factor Y, subunit C4