PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39580.1
Common NameP0013G02.6, P0022F12.30
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 371aa    MW: 40289.8 Da    PI: 5.9107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-14187234355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  LOC_Os01g39580.1 187 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILSETIAYLKELE 234
                       5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.967184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-15187238No hitNo description
Gene3DG3DSA:4.10.280.103.8E-17188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18188249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-16190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSRVPTSWGF VYSRVNKVSE EPNVVNRITT AFWELQLPAC SDEPISSGTP SSPSSPPTKE  60
TGDANTVVID DLFLAHSDAI LPAGGDQKEE HQLGDDLGQQ QAATAMEIDD DVIYSLIRNW  120
DNDSSSSWIE LLDHAIVSPA SCFVPWKRTE LDKEAVAGGE AAQRLLKKVV GGGGAWMNRA  180
AGSCSIKNHV MSERRRREKL NEMFLILKSL VPSIDKVDKA SILSETIAYL KELERRVQEL  240
ESGKKVSRPA KRKPCSETII GGGGGGGGAG AVKEHHHWVL SESQEGTPSD VRVIVMDKDE  300
LHLEVQCRWK ELMMTRVFDA IKSLRLDVVS VQASAPDGLL GLKIRAKYAS SAAVVPAMIS  360
ETLRTAVAGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-12188244864Transcription factor MYC2
5gnj_B3e-12188244864Transcription factor MYC2
5gnj_E3e-12188244864Transcription factor MYC2
5gnj_F3e-12188244864Transcription factor MYC2
5gnj_G3e-12188244864Transcription factor MYC2
5gnj_I3e-12188244864Transcription factor MYC2
5gnj_M3e-12188244864Transcription factor MYC2
5gnj_N3e-12188244864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRE
2193198RRRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ657A4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029080.0AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02.
GenBankAP0033100.0AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878345.10.0anthocyanin regulatory R-S protein
TrEMBLQ657A40.0Q657A4_ORYSJ; Regulatory protein B-Peru-like
STRINGORUFI01G22990.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.35e-31bHLH family protein