PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39480.1
Common NameP0022F12.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 331aa    MW: 36330.3 Da    PI: 5.8562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11169216355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrR +++N+ f +L++l+P+ +      K++Ka+ L +++ Y+k+L+
  LOC_Os01g39480.1 169 KNHVMSERRRWEKLNEMFLTLKSLVPSiD------KVDKASSLAETIAYLKELE 216
                       5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.411166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-11169220No hitNo description
SuperFamilySSF474592.49E-16169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15170226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-9170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVPEEPNVVN RITTAFWEFQ LLACSDEPIS SGTPSSPSSP LTKETGDANT VLIDDLFLAH  60
SDAILAGGDQ EDHQLGNDLG QQQAATAMEI DDDMIYSLIR NWDNDSSSSW IELLDHVVVS  120
PASCFVPWKR TELDKQAVAG GGEAAQRLLK KAVGGGGAWM NRAAGSSIKN HVMSERRRWE  180
KLNEMFLTLK SLVPSIDKVD KASSLAETIA YLKELERRVQ ELESGKKVSR PAKRKPCSER  240
IIGGGDAGAV KEHHHWVLSE SQEGTPSNVR VIVMDKDELH LEVHCRWKEL MMTRLFDAIK  300
SLRLDVLSVQ ASAPNGLLGL KIRAKVVSLT *
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975970560.0
Expression AtlasQ657A1-
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033100.0AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638330.10.0anthocyanin regulatory R-S protein
SwissprotP130271e-55ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A0E0MYD80.0A0A0E0MYD8_ORYRU; Uncharacterized protein
TrEMBLQ657A10.0Q657A1_ORYSJ; Regulatory protein B-Peru-like
STRINGORUFI01G22990.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-28bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]