PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g39180.1 | ||||||||
Common Name | B1129G05.35, B1151A10.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 322aa MW: 35174.2 Da PI: 9.8144 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 76.5 | 4.8e-24 | 89 | 191 | 2 | 101 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpa......eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aa+++l+ akd vla + pa +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P++Ga+gv+++l++++e LOC_Os01g39180.1 89 EAAMRHLQG--AKDGVLAGV-PArvilhgDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQSGATGVMWHLERKVE 178 578888877..566666555.333333347789************************************************************ PP DUF260 89 qlkaelallkeel 101 ++ a+l++l+++l LOC_Os01g39180.1 179 RELAKLSKLRQKL 191 ********99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.401 | 85 | 191 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-19 | 92 | 188 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAISPAATAS TPRWSSSSTI SACPSQAAMC ITVLDPSSEI SNHTSTAAQS PPKSGRRGGF 60 DIGDNGGRSV PCAQVISTAA ASVPAAAAEA AMRHLQGAKD GVLAGVPARV ILHGDEKVRL 120 LNAQRLFGTR NIRRFVQATL PEKRDDLMSS IKYEAQVWAR NPQSGATGVM WHLERKVERE 180 LAKLSKLRQK LEMCKNLAAK KSILEAKGVG VRQVTFKEQE QERQYQACPA RISAWTLRLF 240 VHRSACEIPI SQMESHIACM QFFGRAFMAF VGQIQEEAIN HEAEDAHYDF FPLQPHLVLD 300 SPRNPHPLGR PPLTRSHNVH G* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q656S6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g39180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g39180 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. | |||
GenBank | AP003413 | 0.0 | AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q656S6 | 0.0 | Q656S6_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI01G22760.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19872 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 6e-10 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g39180.1 |