PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g39160.1 | ||||||||
Common Name | B1129G05.33, B1151A10.14, LOC107280880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 17865.2 Da PI: 5.194 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.5 | 1.9e-32 | 26 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqq 86 aCaaC++l+r+C+++C+la++fpa +qp + f+n+ +lFG+ nv+ +l a+ ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++ LOC_Os01g39160.1 26 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLERE 118 7*********************996645456699*****************999889999********************************* PP DUF260 87 leqlkaelallkee 100 l++lkaela++++ LOC_Os01g39160.1 119 LDCLKAELATAQSA 132 *********99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.711 | 25 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-29 | 26 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAQPWRPFVA DISPVAVADD DDPPAACAAC AHLGRACPTG CPLARCFPAA GDQPADGRLF 60 RNAFRLFGVG NVVGFLLAAG GDPGKRRDAA VSVAYEADAR ADDPVRGAHG VVMDLERELD 120 CLKAELATAQ SALARHRQYA QPPPPPPDAL DRARALNYFC HGCCGDVDGA A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-16 | 25 | 136 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-16 | 25 | 136 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8L4M5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g39160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g39160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. | |||
GenBank | AP003413 | 0.0 | AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638310.1 | 1e-117 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A0E0MYB0 | 1e-116 | A0A0E0MYB0_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q8L4M5 | 1e-116 | Q8L4M5_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI01G22740.1 | 1e-116 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18117 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-15 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g39160.1 |
Entrez Gene | 107280880 |