PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39100.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 785aa    MW: 84583.7 Da    PI: 6.0348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-06460482225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k ++C ++ar G C  Gd C++ H
  LOC_Os01g39100.1 460 KSKPCTHYAR-GSCLKGDDCPYDH 482
                       6789******.************* PP
2zf-CCCH30.94.6e-10488509526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f+++G C +Gd+CkF+H+
  LOC_Os01g39100.1 488 PCHNFMENGMCIRGDKCKFSHV 509
                       7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.967429456IPR000571Zinc finger, CCCH-type
SMARTSM003560.079430455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5430454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4457483IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5458484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187458485IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5460483IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018486510IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6487510IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277488511IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7488509IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4488508IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MEEPSPVPPA AAPASLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAARP  60
DAEVEPAAAA AIPPGGSGGL PHGDSPPPAD VGGDRGKNLE VEVALGNHAP HETPSTSASP  120
DAAVNPTTDP GVVPQGTEEG RVAGVERVEG VEEVVFAGGT SGEADADGDE LGAGAGLMGD  180
DEALRSMQAC LDGEDSELVI EMVGNDNEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG  240
DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGF EEGEIEGDTQ NLDADDSGNS  300
ELQDDVELEE DFDSRRIEED GSCGHDLKSN LHLIPQKGNG DTARNMLCNS KGDSQMHVAR  360
AQAVSYDEVL DWNETPLPDD KALKHGNTRK RTLTEERKAK KTKTKRIKRA LQREAEGVKR  420
LKLQPVIKPK VVKVCHFYLH GKCQQGNLCK FSHDTTPLTK SKPCTHYARG SCLKGDDCPY  480
DHELSKYPCH NFMENGMCIR GDKCKFSHVI PTAEGPSTPD AKKSNASSVP EKANCQEQTS  540
RQKTSTVYSG EPATSVPIKH HSILKNLAGI SGNAQKDVVS TEKHKNPTGG PHQNFGRPQP  600
ADGKKLGKHN GHRSAPLLDE KDSSKQANLH PCSEPKKNSL PTTAAVPSSH TWMLFSDEPV  660
PMRLCSIFCI PHTSFIAVTP SCKLQLLMWT YFAELGANIY CQILKIGNYQ MNALLFNPQA  720
YNSKSQFLIF ISLQQQEANS AAKGSMPVCI HQLVLSMFLN KDLNWKVGVY LFVWDYENAK  780
RHMT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.589811e-179leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975970501e-179
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0E0MYA50.0A0A0E0MYA5_ORYRU; Uncharacterized protein
STRINGORUFI01G22700.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Representative plantOGRP81611212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-06C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]